CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AETGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflora GN=ndhA PE=3 SV=1) HSP 1 Score: 282.722 bits (722), Expect = 1.884e-75 Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 M I EVQ INSF RLES +EVYG++W PI VL I GVLV+VWLEREISA IQQRIGPEYA LGILQALADG KLLFKENL PS GN++LFSIGPSIAVI+ILLSY VIPFS +LVLAD NIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC+LSISL Sbjct: 1 MRIFATEVQTINSFVRLESFKEVYGLIWEFLPIFSLVLGILTGVLVLVWLEREISARIQQRIGPEYAGALGILQALADGIKLLFKENLRPSIGNTTLFSIGPSIAVISILLSYSVIPFSNHLVLADFNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhA PE=2 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74 Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII +V+ INSFS LE L+EVYG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. indica GN=ndhA PE=2 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74 Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII +V+ INSFS LE L+EVYG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa GN=ndhA PE=2 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74 Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII +V+ INSFS LE L+EVYG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza nivara GN=ndhA PE=2 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74 Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII +V+ INSFS LE L+EVYG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena GN=ndhA PE=3 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74 Identity = 143/178 (80.34%), Postives = 158/178 (88.76%), Query Frame = 3 Query: 90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E Q INSF R ES +EVYG++W+L PI VL ITIGVLVIVWLER+ISAGIQ+RIGPEYA PLGILQALADG KLLFKE+LLPSRG+ LFS+GPSIAV++ILLSY VIPF ++LVL DL+IG+ LWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL Sbjct: 5 EAQAINSFFRSESSKEVYGLIWLLVPILTLVLGITIGVLVIVWLERKISAGIQRRIGPEYAGPLGILQALADGVKLLFKEDLLPSRGDIRLFSVGPSIAVVSILLSYSVIPFGHHLVLTDLSIGVSLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 182
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SACOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum officinarum GN=ndhA PE=2 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 6.061e-74 Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+LE L+E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG LFSIGPSIAVI+ILLS+LVIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKLELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SACHY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum hybrid GN=ndhA PE=2 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 6.061e-74 Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+LE L+E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG LFSIGPSIAVI+ILLS+LVIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKLELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HORVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hordeum vulgare GN=ndhA PE=2 SV=4) HSP 1 Score: 276.944 bits (707), Expect = 1.034e-73 Identity = 144/184 (78.26%), Postives = 164/184 (89.13%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+LE L+EVYG++ +L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+LVIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zea mays GN=ndhA PE=2 SV=3) HSP 1 Score: 276.174 bits (705), Expect = 1.763e-73 Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+LE +E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKLELFKEIYGLIWIL-PIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |