CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AETGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflora GN=ndhA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.884e-75
Identity = 150/184 (81.52%), Postives = 159/184 (86.41%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            M I   EVQ INSF RLES +EVYG++W   PI   VL I  GVLV+VWLEREISA IQQRIGPEYA  LGILQALADG KLLFKENL PS GN++LFSIGPSIAVI+ILLSY VIPFS +LVLAD NIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC+LSISL
Sbjct:    1 MRIFATEVQTINSFVRLESFKEVYGLIWEFLPIFSLVLGILTGVLVLVWLEREISARIQQRIGPEYAGALGILQALADGIKLLFKENLRPSIGNTTLFSIGPSIAVISILLSYSVIPFSNHLVLADFNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhA PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74
Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   +V+ INSFS LE L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. indica GN=ndhA PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74
Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   +V+ INSFS LE L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa GN=ndhA PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74
Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   +V+ INSFS LE L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza nivara GN=ndhA PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74
Identity = 144/184 (78.26%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   +V+ INSFS LE L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVQVEAINSFSNLELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena GN=ndhA PE=3 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.641e-74
Identity = 143/178 (80.34%), Postives = 158/178 (88.76%), Query Frame = 3 
Query:   90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E Q INSF R ES +EVYG++W+L PI   VL ITIGVLVIVWLER+ISAGIQ+RIGPEYA PLGILQALADG KLLFKE+LLPSRG+  LFS+GPSIAV++ILLSY VIPF ++LVL DL+IG+ LWIAISSIAPIGLLMSGYGSNNKYSF GGLRAAAQSISYEIPLT CVLSISL
Sbjct:    5 EAQAINSFFRSESSKEVYGLIWLLVPILTLVLGITIGVLVIVWLERKISAGIQRRIGPEYAGPLGILQALADGVKLLFKEDLLPSRGDIRLFSVGPSIAVVSILLSYSVIPFGHHLVLTDLSIGVSLWIAISSIAPIGLLMSGYGSNNKYSFSGGLRAAAQSISYEIPLTPCVLSISL 182
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SACOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum officinarum GN=ndhA PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 6.061e-74
Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+LE L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI+ILLS+LVIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKLELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SACHY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum hybrid GN=ndhA PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 6.061e-74
Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+LE L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI+ILLS+LVIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKLELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HORVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hordeum vulgare GN=ndhA PE=2 SV=4)

HSP 1 Score: 276.944 bits (707), Expect = 1.034e-73
Identity = 144/184 (78.26%), Postives = 164/184 (89.13%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+LE L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+LVIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zea mays GN=ndhA PE=2 SV=3)

HSP 1 Score: 276.174 bits (705), Expect = 1.763e-73
Identity = 142/184 (77.17%), Postives = 161/184 (87.50%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+LE  +E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKLELFKEIYGLIWIL-PIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_AETGR1.884e-7581.52NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSJ4.641e-7478.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSI4.641e-7478.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSA4.641e-7478.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYNI4.641e-7478.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NUPAD4.641e-7480.34NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SACOF6.061e-7477.72NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SACHY6.061e-7477.72NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HORVU1.034e-7378.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MAIZE1.763e-7377.17NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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