CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Triticum aestivum GN=ndhA PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 6.701e-73
Identity = 143/184 (77.72%), Postives = 163/184 (88.59%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSF +LE L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+LVIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFWKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.493e-72
Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+LE L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+  LFSIGPSIAVI+ILLS+LVIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.546e-72
Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII   EV+ INSFS+ E L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI++LLS+LVIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSF GGLRAAAQSISYEIPLT CVL+ISL
Sbjct:    1 MIIDRVEVETINSFSKSELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISVLLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.495e-67
Identity = 125/178 (70.22%), Postives = 151/178 (84.83%), Query Frame = 3
Query:   96 QDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629
            Q I  FS L   ++ +  +W+   I I +L ITIGVLV+VWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++PS+G++ LF+IGP+I VI + LSYLVIPF +N++LADLNIG+F WIAISSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL++
Sbjct:   10 QVITFFSALSLSKDFFNFIWIAFSILILLLTITIGVLVLVWLERKISAGIQQRIGPEYAGPLGIIQALADGFKLLLKEDIIPSKGDNWLFNIGPAIVVIPVFLSYLVIPFGHNIILADLNIGVFFWIAISSIVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLQL 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Anthoceros formosae GN=ndhA PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.599e-66
Identity = 122/164 (74.39%), Postives = 144/164 (87.80%), Query Frame = 3
Query:  132 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +  LW+ A I I V  + IGVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADGTKLL KE+++PSRG++ LFSIGP+I VI +LLSYLVIPF +N++LADLNIG+F WIA+SSIAP+GL M+GYGSNNKYSFLGGLRA AQ+ISYEIPL LCVLSISL
Sbjct:   22 KDFFSFLWITASILILVSGVVIGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGTKLLLKEDIIPSRGDALLFSIGPAIVVIPVLLSYLVIPFGHNIILADLNIGVFFWIAVSSIAPLGLFMAGYGSNNKYSFLGGLRAVAQAISYEIPLALCVLSISL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.146e-64
Identity = 121/178 (67.98%), Postives = 148/178 (83.15%), Query Frame = 3
Query:   90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E Q I  FS  E  +E   ++W++  I   ++ +T+GVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++P+RG+  LF++GP+I VI + LSYLVIPF  +++LADL IG+F WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    9 EKQGIILFSESELSKEFLELIWIIVSILTTIVGVTLGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGIKLLLKEDVIPARGDIWLFNVGPAIVVIPVFLSYLVIPFGKHIILADLGIGVFFWIAVSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.954e-64
Identity = 129/186 (69.35%), Postives = 154/186 (82.80%), Query Frame = 3
Query:   72 MIIAT--PEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            M+I T  PE + IN    L  ++E++G++W+   I I +L + IG+LVIVWLER+ISAGIQQRIGPEYA PLGILQALADG KLL KE+++PSRG+  LFSIGP+I VI IL SYLVIPF  ++VLADL+IG+F  IA+SSIAP+GLLM+GYGSNNKYSF GGLRAAAQSISYEIPL LCVLSISL
Sbjct:    1 MVINTTDPEERVINLSFVLGFIKEIFGLIWIRIYILIPILGVLIGLLVIVWLERKISAGIQQRIGPEYAGPLGILQALADGIKLLLKEDIIPSRGDLWLFSIGPAIVVIPILSSYLVIPFGRHIVLADLSIGVFFRIAVSSIAPLGLLMAGYGSNNKYSFSGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 9.699e-64
Identity = 114/177 (64.41%), Postives = 148/177 (83.62%), Query Frame = 3
Query:   90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 620
            E Q I+ F +L   ++++G +W++ PI  Y L +TIG+ VIVWLER+ISAG+QQRIGPE+A PLGI+QALADG KLL KE+++PSRG+S LF++GP + V+ + LSYLVIP  + ++LADL+IG+F WIA+SS+AP+GLL +GYGSNNKYS LGGLRAAAQSISYEIPL LCVLS+S
Sbjct:    8 EEQVIDLFYKLGFPKDLFGFIWIITPILTYTLGVTIGISVIVWLERKISAGVQQRIGPEHAGPLGIIQALADGAKLLSKEDIIPSRGDSFLFNVGPVMVVVPVFLSYLVIPLGHGIILADLDIGVFFWIAVSSVAPLGLLTAGYGSNNKYSSLGGLRAAAQSISYEIPLALCVLSVS 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chlorokybus atmophyticus GN=ndhA PE=3 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 4.075e-62
Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 3
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++I   +   IN F  L   +++   LW+  PI + ++  TIGVLVIVWLER+ISAG+QQRIGPE+A PLG+LQ LADG KL+FKE+++PS+ +  LF++GP++ VI + L+YLV+PF ++LV+AD+++G+F WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQ+ISYEIPL+LCVL+I L
Sbjct:    2 LLIIDLQTAFINWFVGLGVSKDISAALWIPLPILVVIVGATIGVLVIVWLERKISAGVQQRIGPEFAGPLGVLQPLADGLKLVFKEDIIPSKADIWLFTLGPALVVIPVFLAYLVVPFGHDLVVADISLGVFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQAISYEIPLSLCVLAICL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.548e-61
Identity = 115/178 (64.61%), Postives = 145/178 (81.46%), Query Frame = 3
Query:   90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E Q +N  + L   ++++ ILW +  I   +L +T+GVLVIVWLER+ISAG+QQR+GPEY  PLGILQ L DG KLL KE+++P++GN+ LF++GP+I VI + LSYLVIPF   ++L+DL IG+F WIA+SSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:    9 EEQVMNLVNLLGISKDLFFILWTVLSILTLLLGVTMGVLVIVWLERKISAGMQQRMGPEYTGPLGILQTLMDGIKLLLKEDIVPAKGNTWLFNLGPAIVVIPVFLSYLVIPFGQKMILSDLGIGVFFWIAVSSIVPLGLLMTGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_WHEAT6.701e-7377.72NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AGRST1.493e-7277.72NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SORBI2.546e-7276.09NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHYPA5.495e-6770.22NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANTFO1.599e-6674.39NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANGEV1.146e-6467.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CYCTA1.954e-6469.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HUPLU9.699e-6464.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHLAT4.075e-6261.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PSINU1.548e-6164.61NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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