CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Triticum aestivum GN=ndhA PE=2 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 6.701e-73 Identity = 143/184 (77.72%), Postives = 163/184 (88.59%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSF +LE L+EVYG++ +L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+LVIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFWKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 1.493e-72 Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+LE L+EVYG++ +L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+ LFSIGPSIAVI+ILLS+LVIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKLELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1) HSP 1 Score: 272.322 bits (695), Expect = 2.546e-72 Identity = 140/184 (76.09%), Postives = 159/184 (86.41%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 MII EV+ INSFS+ E L+E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG LFSIGPSIAVI++LLS+LVIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSF GGLRAAAQSISYEIPLT CVL+ISL Sbjct: 1 MIIDRVEVETINSFSKSELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISVLLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 5.495e-67 Identity = 125/178 (70.22%), Postives = 151/178 (84.83%), Query Frame = 3 Query: 96 QDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 629 Q I FS L ++ + +W+ I I +L ITIGVLV+VWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++PS+G++ LF+IGP+I VI + LSYLVIPF +N++LADLNIG+F WIAISSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL++ Sbjct: 10 QVITFFSALSLSKDFFNFIWIAFSILILLLTITIGVLVLVWLERKISAGIQQRIGPEYAGPLGIIQALADGFKLLLKEDIIPSKGDNWLFNIGPAIVVIPVFLSYLVIPFGHNIILADLNIGVFFWIAISSIVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLQL 187
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Anthoceros formosae GN=ndhA PE=2 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.599e-66 Identity = 122/164 (74.39%), Postives = 144/164 (87.80%), Query Frame = 3 Query: 132 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ + LW+ A I I V + IGVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADGTKLL KE+++PSRG++ LFSIGP+I VI +LLSYLVIPF +N++LADLNIG+F WIA+SSIAP+GL M+GYGSNNKYSFLGGLRA AQ+ISYEIPL LCVLSISL Sbjct: 22 KDFFSFLWITASILILVSGVVIGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGTKLLLKEDIIPSRGDALLFSIGPAIVVIPVLLSYLVIPFGHNIILADLNIGVFFWIAVSSIAPLGLFMAGYGSNNKYSFLGGLRAVAQAISYEIPLALCVLSISL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 1.146e-64 Identity = 121/178 (67.98%), Postives = 148/178 (83.15%), Query Frame = 3 Query: 90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E Q I FS E +E ++W++ I ++ +T+GVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++P+RG+ LF++GP+I VI + LSYLVIPF +++LADL IG+F WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 9 EKQGIILFSESELSKEFLELIWIIVSILTTIVGVTLGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGIKLLLKEDVIPARGDIWLFNVGPAIVVIPVFLSYLVIPFGKHIILADLGIGVFFWIAVSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.954e-64 Identity = 129/186 (69.35%), Postives = 154/186 (82.80%), Query Frame = 3 Query: 72 MIIAT--PEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 M+I T PE + IN L ++E++G++W+ I I +L + IG+LVIVWLER+ISAGIQQRIGPEYA PLGILQALADG KLL KE+++PSRG+ LFSIGP+I VI IL SYLVIPF ++VLADL+IG+F IA+SSIAP+GLLM+GYGSNNKYSF GGLRAAAQSISYEIPL LCVLSISL Sbjct: 1 MVINTTDPEERVINLSFVLGFIKEIFGLIWIRIYILIPILGVLIGLLVIVWLERKISAGIQQRIGPEYAGPLGILQALADGIKLLLKEDIIPSRGDLWLFSIGPAIVVIPILSSYLVIPFGRHIVLADLSIGVFFRIAVSSIAPLGLLMAGYGSNNKYSFSGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 9.699e-64 Identity = 114/177 (64.41%), Postives = 148/177 (83.62%), Query Frame = 3 Query: 90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 620 E Q I+ F +L ++++G +W++ PI Y L +TIG+ VIVWLER+ISAG+QQRIGPE+A PLGI+QALADG KLL KE+++PSRG+S LF++GP + V+ + LSYLVIP + ++LADL+IG+F WIA+SS+AP+GLL +GYGSNNKYS LGGLRAAAQSISYEIPL LCVLS+S Sbjct: 8 EEQVIDLFYKLGFPKDLFGFIWIITPILTYTLGVTIGISVIVWLERKISAGVQQRIGPEHAGPLGIIQALADGAKLLSKEDIIPSRGDSFLFNVGPVMVVVPVFLSYLVIPLGHGIILADLDIGVFFWIAVSSVAPLGLLTAGYGSNNKYSSLGGLRAAAQSISYEIPLALCVLSVS 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chlorokybus atmophyticus GN=ndhA PE=3 SV=2) HSP 1 Score: 238.424 bits (607), Expect = 4.075e-62 Identity = 114/184 (61.96%), Postives = 151/184 (82.07%), Query Frame = 3 Query: 72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++I + IN F L +++ LW+ PI + ++ TIGVLVIVWLER+ISAG+QQRIGPE+A PLG+LQ LADG KL+FKE+++PS+ + LF++GP++ VI + L+YLV+PF ++LV+AD+++G+F WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQ+ISYEIPL+LCVL+I L Sbjct: 2 LLIIDLQTAFINWFVGLGVSKDISAALWIPLPILVVIVGATIGVLVIVWLERKISAGVQQRIGPEFAGPLGVLQPLADGLKLVFKEDIIPSKADIWLFTLGPALVVIPVFLAYLVVPFGHDLVVADISLGVFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQAISYEIPLSLCVLAICL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.548e-61 Identity = 115/178 (64.61%), Postives = 145/178 (81.46%), Query Frame = 3 Query: 90 EVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E Q +N + L ++++ ILW + I +L +T+GVLVIVWLER+ISAG+QQR+GPEY PLGILQ L DG KLL KE+++P++GN+ LF++GP+I VI + LSYLVIPF ++L+DL IG+F WIA+SSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 9 EEQVMNLVNLLGISKDLFFILWTVLSILTLLLGVTMGVLVIVWLERKISAGMQQRMGPEYTGPLGILQTLMDGIKLLLKEDIVPAKGNTWLFNLGPAIVVIPVFLSYLVIPFGQKMILSDLGIGVFFWIAVSSIVPLGLLMTGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |