CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2) HSP 1 Score: 236.113 bits (601), Expect = 2.022e-61 Identity = 111/174 (63.79%), Postives = 143/174 (82.18%), Query Frame = 3 Query: 102 INSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I+ F LE + +W+ A + VL +T+GVLVIVWLER++SAG+QQRIGPEYA PLGI+Q+LADG KLL KE+++P++GN+ LF+ GP++ V + ++YLVIPF +++L+DL IG+F WIAISSI P+GLL++GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 13 IHLFDELEITMNLSKSIWIFASTLLLVLGVTMGVLVIVWLERKVSAGVQQRIGPEYAGPLGIIQSLADGIKLLLKEDIIPAKGNAWLFAAGPAVVVTPVFITYLVIPFGQHIILSDLGIGVFFWIAISSIVPLGLLVAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zygnema circumcarinatum GN=ndhA PE=3 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 3.450e-61 Identity = 109/171 (63.74%), Postives = 144/171 (84.21%), Query Frame = 3 Query: 111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 FS L ++ +W+ PI + +L IT+GVLV+VWLER+ISA +QQRIGPEYA PLG +QALADG KL+ KE+++PSR + LF++GP+I VI +LLS+LVIPF++ L++AD++IG+F WIA+SS+AP+GLL++GYGSNNKY+FLGGLRAAAQSISYEIPL LCVLS+ L Sbjct: 14 FSNLGIPTQIATFVWICVPIVVLILGITLGVLVLVWLERKISAAVQQRIGPEYAGPLGTIQALADGLKLILKEDIIPSRADKWLFALGPAIVVIPVLLSFLVIPFNHQLIVADISIGMFFWIAVSSVAPVGLLVAGYGSNNKYAFLGGLRAAAQSISYEIPLALCVLSVVL 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MESVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride GN=ndhA PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60 Identity = 109/171 (63.74%), Postives = 138/171 (80.70%), Query Frame = 3 Query: 111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 FS L E LW+ PI + ++ +GVLV+VWLER+ISA +QQRIGPEYA PLG+LQ LADG KL FKE+++PS+G+ LF++GP+I VI I LSYL++PF NL+++++N+GIF WI +SS+AP+GLLMSGYGSNNKYSFLGGLRA AQS+SYEIPL LCVLSI L Sbjct: 15 FSNLGFSNEFSKALWIPLPILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSKGDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQSLSYEIPLALCVLSICL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MARPO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Marchantia polymorpha GN=ndhA PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60 Identity = 112/171 (65.50%), Postives = 141/171 (82.46%), Query Frame = 3 Query: 111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 F L +E + LW++ I I +L +TIGVLV+VWLER+ISA IQQRIGPEYA PLGI+QALADG KL KE+++P++G+ LF+IGP + +I + LSYLVIPF YN++LA+ +IG+F WIA+SS+ P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL L VLSI+L Sbjct: 15 FFTLGFSKEFFNFLWIIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDIVPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIAL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nephroselmis olivacea GN=ndhA PE=3 SV=1) HSP 1 Score: 231.491 bits (589), Expect = 4.981e-60 Identity = 109/167 (65.27%), Postives = 140/167 (83.83%), Query Frame = 3 Query: 123 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ +++ +LWV PI V+ T+GVLVIVWLER+ISAG+QQR+GPEY LG+LQ LADG KL+FKE+++P++ ++ LF++GP++ VI I L+YLV+PF L++ADL IGIF WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYE+PL +CVLS+ L Sbjct: 21 DNFRDLGSVLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFKEDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLIIADLRIGIFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCL 187
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_STAPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Staurastrum punctulatum GN=ndhA PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 8.497e-60 Identity = 109/158 (68.99%), Postives = 137/158 (86.71%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +W+ PI + VL T+GVLVIVWLER+ISA +QQRIGPEYA PLGI+QAL DG KL+ KE+++PS+G++ LF++GP+I VI I+LSYLV+PF NL++AD+ IGIF WIAISS+AP+GLL++GYGSNNKYS LGGLRAAAQ+ISYEIPL LCVL+I L Sbjct: 28 IWICIPILVVVLGSTLGVLVIVWLERKISAAVQQRIGPEYAGPLGIIQALIDGLKLILKEDIIPSKGDNWLFTLGPAIVVIPIVLSYLVVPFGPNLIVADIGIGIFFWIAISSVAPMGLLIAGYGSNNKYSLLGGLRAAAQAISYEIPLALCVLAIIL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chaetosphaeridium globosum GN=ndhA PE=3 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 1.227e-58 Identity = 106/155 (68.39%), Postives = 135/155 (87.10%), Query Frame = 3 Query: 159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 L PI I +L T+GVLVIVWLER+ISA +QQRIGPEYA PLG++QALADG KL+ KE+++P++G+ LFS+GP++ V+ + LSYLV+PF + L+LA+L +GI WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQ+ISYEIPL LCVLS++L Sbjct: 27 LIPILIILLGATLGVLVIVWLERKISAAVQQRIGPEYAGPLGMIQALADGLKLVLKEDIIPAKGDPWLFSVGPALVVVPVFLSYLVVPFGHELILANLGVGILFWIALSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQAISYEIPLALCVLSVAL 181
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhA PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 5.155e-57 Identity = 105/176 (59.66%), Postives = 142/176 (80.68%), Query Frame = 3 Query: 114 SRLESLQ------EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 S +E+LQ E+ +W+ P+ + ++ T+GVLV+VWLER+ISA QQR+GPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP++ VI + LSYL++PF NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKY+ LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 10 SFIETLQSFGLSHEIAKTIWLPLPLLLMIIGATVGVLVVVWLERKISAAAQQRVGPEYAGPLGVLQPVADGLKLVFKEDVVPAKTDPWLFTLGPALVVIPVFLSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYSSNNKYALLGGLRAAAQSISYEIPLALAVLAIAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7424) GN=ndhA PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.959e-56 Identity = 100/159 (62.89%), Postives = 134/159 (84.28%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++W+ P+ + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + +SYL++PF NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 27 VIWMPLPMILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhA PE=3 SV=2) HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56 Identity = 101/157 (64.33%), Postives = 131/157 (83.44%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 + W+ P + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + LSYL++PF NLV+ D+N+GIFLWIA+SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL+L VL+I Sbjct: 27 LFWIPLPSILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAKADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLSLAVLAI 183 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |