CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.022e-61
Identity = 111/174 (63.79%), Postives = 143/174 (82.18%), Query Frame = 3
Query:  102 INSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I+ F  LE    +   +W+ A   + VL +T+GVLVIVWLER++SAG+QQRIGPEYA PLGI+Q+LADG KLL KE+++P++GN+ LF+ GP++ V  + ++YLVIPF  +++L+DL IG+F WIAISSI P+GLL++GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:   13 IHLFDELEITMNLSKSIWIFASTLLLVLGVTMGVLVIVWLERKVSAGVQQRIGPEYAGPLGIIQSLADGIKLLLKEDIIPAKGNAWLFAAGPAVVVTPVFITYLVIPFGQHIILSDLGIGVFFWIAISSIVPLGLLVAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zygnema circumcarinatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.450e-61
Identity = 109/171 (63.74%), Postives = 144/171 (84.21%), Query Frame = 3
Query:  111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            FS L    ++   +W+  PI + +L IT+GVLV+VWLER+ISA +QQRIGPEYA PLG +QALADG KL+ KE+++PSR +  LF++GP+I VI +LLS+LVIPF++ L++AD++IG+F WIA+SS+AP+GLL++GYGSNNKY+FLGGLRAAAQSISYEIPL LCVLS+ L
Sbjct:   14 FSNLGIPTQIATFVWICVPIVVLILGITLGVLVLVWLERKISAAVQQRIGPEYAGPLGTIQALADGLKLILKEDIIPSRADKWLFALGPAIVVIPVLLSFLVIPFNHQLIVADISIGMFFWIAVSSVAPVGLLVAGYGSNNKYAFLGGLRAAAQSISYEIPLALCVLSVVL 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MESVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride GN=ndhA PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60
Identity = 109/171 (63.74%), Postives = 138/171 (80.70%), Query Frame = 3
Query:  111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            FS L    E    LW+  PI + ++   +GVLV+VWLER+ISA +QQRIGPEYA PLG+LQ LADG KL FKE+++PS+G+  LF++GP+I VI I LSYL++PF  NL+++++N+GIF WI +SS+AP+GLLMSGYGSNNKYSFLGGLRA AQS+SYEIPL LCVLSI L
Sbjct:   15 FSNLGFSNEFSKALWIPLPILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSKGDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQSLSYEIPLALCVLSICL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MARPO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Marchantia polymorpha GN=ndhA PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.236e-60
Identity = 112/171 (65.50%), Postives = 141/171 (82.46%), Query Frame = 3
Query:  111 FSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            F  L   +E +  LW++  I I +L +TIGVLV+VWLER+ISA IQQRIGPEYA PLGI+QALADG KL  KE+++P++G+  LF+IGP + +I + LSYLVIPF YN++LA+ +IG+F WIA+SS+ P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL L VLSI+L
Sbjct:   15 FFTLGFSKEFFNFLWIIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDIVPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIAL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nephroselmis olivacea GN=ndhA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.981e-60
Identity = 109/167 (65.27%), Postives = 140/167 (83.83%), Query Frame = 3
Query:  123 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +++  +LWV  PI   V+  T+GVLVIVWLER+ISAG+QQR+GPEY   LG+LQ LADG KL+FKE+++P++ ++ LF++GP++ VI I L+YLV+PF   L++ADL IGIF WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYE+PL +CVLS+ L
Sbjct:   21 DNFRDLGSVLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFKEDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLIIADLRIGIFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCL 187          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_STAPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Staurastrum punctulatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.497e-60
Identity = 109/158 (68.99%), Postives = 137/158 (86.71%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +W+  PI + VL  T+GVLVIVWLER+ISA +QQRIGPEYA PLGI+QAL DG KL+ KE+++PS+G++ LF++GP+I VI I+LSYLV+PF  NL++AD+ IGIF WIAISS+AP+GLL++GYGSNNKYS LGGLRAAAQ+ISYEIPL LCVL+I L
Sbjct:   28 IWICIPILVVVLGSTLGVLVIVWLERKISAAVQQRIGPEYAGPLGIIQALIDGLKLILKEDIIPSKGDNWLFTLGPAIVVIPIVLSYLVVPFGPNLIVADIGIGIFFWIAISSVAPMGLLIAGYGSNNKYSLLGGLRAAAQAISYEIPLALCVLAIIL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chaetosphaeridium globosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.227e-58
Identity = 106/155 (68.39%), Postives = 135/155 (87.10%), Query Frame = 3
Query:  159 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            L PI I +L  T+GVLVIVWLER+ISA +QQRIGPEYA PLG++QALADG KL+ KE+++P++G+  LFS+GP++ V+ + LSYLV+PF + L+LA+L +GI  WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQ+ISYEIPL LCVLS++L
Sbjct:   27 LIPILIILLGATLGVLVIVWLERKISAAVQQRIGPEYAGPLGMIQALADGLKLVLKEDIIPAKGDPWLFSVGPALVVVPVFLSYLVVPFGHELILANLGVGILFWIALSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQAISYEIPLALCVLSVAL 181          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhA PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.155e-57
Identity = 105/176 (59.66%), Postives = 142/176 (80.68%), Query Frame = 3
Query:  114 SRLESLQ------EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            S +E+LQ      E+   +W+  P+ + ++  T+GVLV+VWLER+ISA  QQR+GPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP++ VI + LSYL++PF  NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKY+ LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   10 SFIETLQSFGLSHEIAKTIWLPLPLLLMIIGATVGVLVVVWLERKISAAAQQRVGPEYAGPLGVLQPVADGLKLVFKEDVVPAKTDPWLFTLGPALVVIPVFLSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYSSNNKYALLGGLRAAAQSISYEIPLALAVLAIAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7424) GN=ndhA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.959e-56
Identity = 100/159 (62.89%), Postives = 134/159 (84.28%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++W+  P+ + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + +SYL++PF  NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   27 VIWMPLPMILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56
Identity = 101/157 (64.33%), Postives = 131/157 (83.44%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            + W+  P  + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + LSYL++PF  NLV+ D+N+GIFLWIA+SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL+L VL+I
Sbjct:   27 LFWIPLPSILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAKADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLSLAVLAI 183          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_ADICA2.022e-6163.79NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ZYGCR3.450e-6163.74NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MESVI2.236e-6063.74NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MARPO2.236e-6065.50NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NEPOL4.981e-6065.27NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_STAPU8.497e-6068.99NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHAGL1.227e-5868.39NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SYNP25.155e-5759.66NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_CYAP71.959e-5662.89NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNY32.558e-5664.33NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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