CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP8 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 8801) GN=ndhA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56
Identity = 104/174 (59.77%), Postives = 136/174 (78.16%), Query Frame = 3
Query:  102 INSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            I S  +L     V   LW+  P  + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + +SYL++PF  NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL   VL+I++
Sbjct:   12 IESLKQLGLPDGVAKALWIPLPSFLMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDIIPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLAFSVLAIAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 100/156 (64.10%), Postives = 129/156 (82.69%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+  P  + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + +SYL++PF  NLV+ DLN+GIF WIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 LWIPFPSFLMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVIPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFFWIALSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_THEEB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhA PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 101/176 (57.39%), Postives = 139/176 (78.98%), Query Frame = 3
Query:   96 QDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            Q I++   L    ++  +LW+  P+ + ++  T+GVLV VWLER+ISA +QQRIGPEY  PLGIL  LADG KL+FKE++LP+  +  LF++GP++ VI + LSY+++PF  NL++++L +G+FLWIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL++++
Sbjct:   10 QFISALQSLGLSHDLAKLLWLPLPMLMMLIVATVGVLVAVWLERKISAAVQQRIGPEYIGPLGILAPLADGLKLIFKEDVLPANSDRWLFTLGPAVVVIPVFLSYIIVPFGQNLLISNLAMGVFLWIALSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 101/175 (57.71%), Postives = 136/175 (77.71%), Query Frame = 3
Query:   93 VQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +Q + S      L +V   LW+  P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ+ ADG KL+ KE+++P++ ++ LF+IGP++ VI + LSYL++PF   L++ ++  G+FLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   12 IQSLESLGLSPGLSKV---LWMPLPMLLMIIAATVGVLVTVWLERKISAAVQQRIGPEYAGPLGVLQSAADGLKLILKEDIIPAKADAFLFTIGPALVVIPVFLSYLIVPFGQELIITNVGAGVFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 101/175 (57.71%), Postives = 136/175 (77.71%), Query Frame = 3
Query:   93 VQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +Q + S      L +V   LW+  P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ+ ADG KL+ KE+++P++ ++ LF+IGP++ VI + LSYL++PF   L++ ++  G+FLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   12 IQSLESLGLSPGLSKV---LWMPLPMLLMIIAATVGVLVTVWLERKISAAVQQRIGPEYAGPLGVLQSAADGLKLILKEDIIPAKADAFLFTIGPALVVIPVFLSYLIVPFGQELIITNVGAGVFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MICAN (NAD(P)H-quinone oxidoreductase subunit 1 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 99/156 (63.46%), Postives = 130/156 (83.33%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +W+  P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF  GP + V+ + +SYL++PF  NL++ DLN+GIFLWI++SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 IWMPLPMFLMIIAATVGVLVCVWLERKISAAVQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFLFGPILVVMPVFVSYLIVPFGQNLLITDLNVGIFLWISLSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chara vulgaris GN=ndhA PE=3 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54
Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            ++ +  PI + ++   +GVLV VWLER+ISA +QQRIGPEYA  LGI+QA+ DG KLL KE+++P++G+  LFSIGP + V  ++LSYLV+PF  N++L+D+ +GIF WI ISSI P+GLL++GY SNNKYS LGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   27 LISIFLPIVLLLVISVLGVLVTVWLERKISAAVQQRIGPEYAGSLGIMQAIVDGVKLLIKEDIIPAQGDRWLFSIGPVLVVTPVILSYLVVPFGKNIILSDIRLGIFFWIVISSITPLGLLIAGYASNNKYSLLGGLRAAAQSISYEIPLTLCVLSISL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP4 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 4.084e-54
Identity = 98/158 (62.03%), Postives = 131/158 (82.91%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            +W+  P+ + ++  TIGVL+ VWLER+ISA  QQRIGPEY  PLG+L  +ADG KLLFKE+++P+  +++LF++GP + VI + LSYL++PF  NL+++DL IG+FLWI++SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   28 VWMPLPMLLMLVGATIGVLISVWLERKISAAAQQRIGPEYIGPLGVLAPVADGLKLLFKEDIVPANADAALFTLGPILVVIPVFLSYLIVPFGQNLLISDLGIGVFLWISLSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAIAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNSC (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9605) GN=ndhA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            EV  +LW+  P+ + ++A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ LADG KLL KE+++P+R +S LF++GP + V+ +++S+L+IPF  NL+++++ +GIFLWI+ SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   24 EVARLLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVVPVIISWLIIPFGQNLLISNVGVGIFLWISFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9902) GN=ndhA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54
Identity = 99/161 (61.49%), Postives = 132/161 (81.99%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            EV  +LW+  P+ + ++A  +GVLV VWLER+ISA +QQR+GPEYA  LG+LQ LADG KLL KE+++P+R +S LF++GP + V+ +++S+L+IPF  NL+++++ +GIFLWIA SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   24 EVARLLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPARADSILFTLGPILVVVPVIVSWLIIPFGQNLLISNVGVGIFLWIAFSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CYAP82.558e-5659.77NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_CYAA52.166e-5564.10NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_THEEB8.230e-5557.39NAD(P)H-quinone oxidoreductase subunit 1 OS=Thermo... [more]
NU1C_SYNP68.230e-5557.71NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNE78.230e-5557.71NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_MICAN8.230e-5563.46NAD(P)H-quinone oxidoreductase subunit 1 OS=Microc... [more]
NU1C_CHAVU1.075e-5463.52NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CYAP44.084e-5462.03NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNSC6.967e-5462.11NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNS96.967e-5461.49NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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