CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP8 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 8801) GN=ndhA PE=3 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 2.558e-56 Identity = 104/174 (59.77%), Postives = 136/174 (78.16%), Query Frame = 3 Query: 102 INSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 I S +L V LW+ P + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + +SYL++PF NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL VL+I++ Sbjct: 12 IESLKQLGLPDGVAKALWIPLPSFLMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDIIPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLAFSVLAIAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhA PE=3 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55 Identity = 100/156 (64.10%), Postives = 129/156 (82.69%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 LW+ P + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + +SYL++PF NLV+ DLN+GIF WIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 LWIPFPSFLMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVIPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFFWIALSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_THEEB (NAD(P)H-quinone oxidoreductase subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhA PE=3 SV=2) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 101/176 (57.39%), Postives = 139/176 (78.98%), Query Frame = 3 Query: 96 QDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 Q I++ L ++ +LW+ P+ + ++ T+GVLV VWLER+ISA +QQRIGPEY PLGIL LADG KL+FKE++LP+ + LF++GP++ VI + LSY+++PF NL++++L +G+FLWIA+SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL++++ Sbjct: 10 QFISALQSLGLSHDLAKLLWLPLPMLMMLIVATVGVLVAVWLERKISAAVQQRIGPEYIGPLGILAPLADGLKLIFKEDVLPANSDRWLFTLGPAVVVIPVFLSYIIVPFGQNLLISNLAMGVFLWIALSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhA PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 101/175 (57.71%), Postives = 136/175 (77.71%), Query Frame = 3 Query: 93 VQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +Q + S L +V LW+ P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ+ ADG KL+ KE+++P++ ++ LF+IGP++ VI + LSYL++PF L++ ++ G+FLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 12 IQSLESLGLSPGLSKV---LWMPLPMLLMIIAATVGVLVTVWLERKISAAVQQRIGPEYAGPLGVLQSAADGLKLILKEDIIPAKADAFLFTIGPALVVIPVFLSYLIVPFGQELIITNVGAGVFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhA PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 101/175 (57.71%), Postives = 136/175 (77.71%), Query Frame = 3 Query: 93 VQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +Q + S L +V LW+ P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ+ ADG KL+ KE+++P++ ++ LF+IGP++ VI + LSYL++PF L++ ++ G+FLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 12 IQSLESLGLSPGLSKV---LWMPLPMLLMIIAATVGVLVTVWLERKISAAVQQRIGPEYAGPLGVLQSAADGLKLILKEDIIPAKADAFLFTIGPALVVIPVFLSYLIVPFGQELIITNVGAGVFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_MICAN (NAD(P)H-quinone oxidoreductase subunit 1 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhA PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55 Identity = 99/156 (63.46%), Postives = 130/156 (83.33%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +W+ P+ + ++A T+GVLV VWLER+ISA +QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF GP + V+ + +SYL++PF NL++ DLN+GIFLWI++SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 IWMPLPMFLMIIAATVGVLVCVWLERKISAAVQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFLFGPILVVMPVFVSYLIVPFGQNLLITDLNVGIFLWISLSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chara vulgaris GN=ndhA PE=3 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54 Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 ++ + PI + ++ +GVLV VWLER+ISA +QQRIGPEYA LGI+QA+ DG KLL KE+++P++G+ LFSIGP + V ++LSYLV+PF N++L+D+ +GIF WI ISSI P+GLL++GY SNNKYS LGGLRAAAQSISYEIPLTLCVLSISL Sbjct: 27 LISIFLPIVLLLVISVLGVLVTVWLERKISAAVQQRIGPEYAGSLGIMQAIVDGVKLLIKEDIIPAQGDRWLFSIGPVLVVTPVILSYLVVPFGKNIILSDIRLGIFFWIVISSITPLGLLIAGYASNNKYSLLGGLRAAAQSISYEIPLTLCVLSISL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP4 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhA PE=3 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 4.084e-54 Identity = 98/158 (62.03%), Postives = 131/158 (82.91%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 +W+ P+ + ++ TIGVL+ VWLER+ISA QQRIGPEY PLG+L +ADG KLLFKE+++P+ +++LF++GP + VI + LSYL++PF NL+++DL IG+FLWI++SSIAPIGLLM+GY SNNKYS LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 28 VWMPLPMLLMLVGATIGVLISVWLERKISAAAQQRIGPEYIGPLGVLAPVADGLKLLFKEDIVPANADAALFTLGPILVVIPVFLSYLIVPFGQNLLISDLGIGVFLWISLSSIAPIGLLMAGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAIAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNSC (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9605) GN=ndhA PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54 Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 EV +LW+ P+ + ++A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ LADG KLL KE+++P+R +S LF++GP + V+ +++S+L+IPF NL+++++ +GIFLWI+ SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 24 EVARLLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVVPVIISWLIIPFGQNLLISNVGVGIFLWISFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9902) GN=ndhA PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 6.967e-54 Identity = 99/161 (61.49%), Postives = 132/161 (81.99%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 EV +LW+ P+ + ++A +GVLV VWLER+ISA +QQR+GPEYA LG+LQ LADG KLL KE+++P+R +S LF++GP + V+ +++S+L+IPF NL+++++ +GIFLWIA SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 24 EVARLLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPARADSILFTLGPILVVVPVIVSWLIIPFGQNLLISNVGVGIFLWIAFSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |