CK939407
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 9.099e-54 Identity = 100/157 (63.69%), Postives = 130/157 (82.80%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +LW+ P+ + ++A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ LADG KLL KE+++P+R +S LF++GP + VI +++S+L+IPF NL+++++ +GIFLWIA SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 LLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVIPVIISWLIIPFGQNLLISNVGVGIFLWIAFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53 Identity = 96/157 (61.15%), Postives = 130/157 (82.80%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 +LW+ P+ + ++A +GVLV VWLER+ISA +QQR+GPEYA LG+LQ LADG KLL KE+++P R +S LF++GP + V+ ++LS+L++PF NL+++D+ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 27 MLWLPFPMLLVLVAAVVGVLVTVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPDRADSILFTLGPVLVVVPVILSWLIVPFGQNLLISDVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53 Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E+ +LW+ P+ + +++ IGVLV VWLER+ISA QQRIGPEYA LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL1A) GN=ndhA PE=3 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53 Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 E+ +LW+ P+ + +++ IGVLV VWLER+ISA QQRIGPEYA LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.647e-53 Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ LW+ P+ + ++ T+GVLV VWLER+ISA QQRIGPE+ PLG L LADG KLLFKE+++P++ + LF++GP I + + LSYLV+PF NLV+ DL + IFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++++ Sbjct: 23 EIAKTLWLPFPMLLMIVVATVGVLVTVWLERKISAAAQQRIGPEFMGPLGTLAPLADGLKLLFKEDVVPAKADPLLFTLGPVIVAVPVFLSYLVVPFGQNLVITDLGVAIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH7803) GN=ndhA PE=3 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 7.703e-53 Identity = 94/157 (59.87%), Postives = 130/157 (82.80%), Query Frame = 3 Query: 147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 ++W+ P+ + ++A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ LADG KLL KE+++P+R + LF++GP + V+ ++LS+L++PF NL+++++ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 27 LIWLPLPMLLVLVAAVVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADGLLFTLGPVLVVVPVILSWLIVPFGQNLLISNVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhA PE=3 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 7.703e-53 Identity = 98/163 (60.12%), Postives = 132/163 (80.98%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ I +++ +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ L Sbjct: 23 EIAHIIWLPLPMLIVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTTGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAVVL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 1.006e-52 Identity = 97/156 (62.18%), Postives = 126/156 (80.77%), Query Frame = 3 Query: 150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617 LW+ P+ I +LA T+ VLV+VWLER+ISA QQRIGPE+ PLG+L LADG KL+ KE+++P++ + LF++GP+I VI + LSYL++PF NL + D+ +GIFLWIA+SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYE+PL L VL++ Sbjct: 28 LWMPLPMLIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKADKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASNNKYSLLGGLRAAAQSISYELPLALSVLAV 183
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMS (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain AS9601) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52 Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52 Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3 Query: 135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+L++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185 The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bpback to top |