CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 9.099e-54
Identity = 100/157 (63.69%), Postives = 130/157 (82.80%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +LW+  P+ + ++A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ LADG KLL KE+++P+R +S LF++GP + VI +++S+L+IPF  NL+++++ +GIFLWIA SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 LLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVIPVIISWLIIPFGQNLLISNVGVGIFLWIAFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53
Identity = 96/157 (61.15%), Postives = 130/157 (82.80%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            +LW+  P+ + ++A  +GVLV VWLER+ISA +QQR+GPEYA  LG+LQ LADG KLL KE+++P R +S LF++GP + V+ ++LS+L++PF  NL+++D+ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   27 MLWLPFPMLLVLVAAVVGVLVTVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPDRADSILFTLGPVLVVVPVILSWLIVPFGQNLLISDVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53
Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E+  +LW+  P+ + +++  IGVLV VWLER+ISA  QQRIGPEYA  LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL1A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.188e-53
Identity = 100/161 (62.11%), Postives = 132/161 (81.99%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            E+  +LW+  P+ + +++  IGVLV VWLER+ISA  QQRIGPEYA  LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.647e-53
Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+   LW+  P+ + ++  T+GVLV VWLER+ISA  QQRIGPE+  PLG L  LADG KLLFKE+++P++ +  LF++GP I  + + LSYLV+PF  NLV+ DL + IFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++++
Sbjct:   23 EIAKTLWLPFPMLLMIVVATVGVLVTVWLERKISAAAQQRIGPEFMGPLGTLAPLADGLKLLFKEDVVPAKADPLLFTLGPVIVAVPVFLSYLVVPFGQNLVITDLGVAIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH7803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 7.703e-53
Identity = 94/157 (59.87%), Postives = 130/157 (82.80%), Query Frame = 3
Query:  147 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            ++W+  P+ + ++A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ LADG KLL KE+++P+R +  LF++GP + V+ ++LS+L++PF  NL+++++ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   27 LIWLPLPMLLVLVAAVVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADGLLFTLGPVLVVVPVILSWLIVPFGQNLLISNVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.703e-53
Identity = 98/163 (60.12%), Postives = 132/163 (80.98%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ I +++  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ L
Sbjct:   23 EIAHIIWLPLPMLIVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTTGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAVVL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.006e-52
Identity = 97/156 (62.18%), Postives = 126/156 (80.77%), Query Frame = 3
Query:  150 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 617
            LW+  P+ I +LA T+ VLV+VWLER+ISA  QQRIGPE+  PLG+L  LADG KL+ KE+++P++ +  LF++GP+I VI + LSYL++PF  NL + D+ +GIFLWIA+SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYE+PL L VL++
Sbjct:   28 LWMPLPMLIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKADKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASNNKYSLLGGLRAAAQSISYELPLALSVLAV 183          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROMS (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain AS9601) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52
Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.314e-52
Identity = 98/163 (60.12%), Postives = 131/163 (80.37%), Query Frame = 3
Query:  135 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+L++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_SYNPX9.099e-5463.69NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNS31.188e-5361.15NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMT1.188e-5362.11NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM11.188e-5362.11NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_TRIEI2.647e-5361.35NAD(P)H-quinone oxidoreductase subunit 1 OS=Tricho... [more]
NU1C_SYNPW7.703e-5359.87NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROM57.703e-5360.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PLEBO1.006e-5262.18NAD(P)H-quinone oxidoreductase subunit 1 OS=Plecto... [more]
NU1C_PROMS1.314e-5260.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM91.314e-5260.12NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
back to top