CK939278

Overview
NameCK939278
Unique NameCK939278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: HEPS2_BACST (Heptaprenyl diphosphate synthase component 2 OS=Bacillus stearothermophilus GN=hepT PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.691e-11
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETV 801
            + L  ++  +++DL  + + L+  V +E   L  AA  +  AGGKR+RP  V L +R      G  +L  + + +A  +E+IH ASL+HDDV+D++D+RRG+ T+
Sbjct:    1 MKLKAMYSFLSDDLAAVEEELERAVQSEYGPLGEAALHLLQAGGKRIRPVFVLLAAR-----FGQYDLE-RMKHVAVALELIHMASLVHDDVIDDADLRRGRPTI 99
[Close]
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: DPS1_HUMAN (Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.919e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:  472 KSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRA-TAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816
            K+ S     + F++   DL+ L ++++  +      L   +E  F   GK  RP +V L++RA        + +    R +A I EMIHTASL+HDDV+D++  RRG+ TV++++G
Sbjct:   85 KTHSGEKYTDPFKLGWRDLKGLYEDIRKELLISTSELKEMSEYYFDGKGKAFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHTVNKIWG 200
The following BLAST results are available for this feature:
BLAST of CK939278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HEPS2_BACST1.691e-1136.19Heptaprenyl diphosphate synthase component 2 OS=Ba... [more]
DPS1_HUMAN4.919e-1133.62Decaprenyl-diphosphate synthase subunit 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_H08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939278 ID=CK939278; Name=CK939278; organism=Citrus sinensis; type=EST; length=816bp
GGGGAAAAACAAAAGCACCCAGTTGAGCTCTTTAGCTTCTTTTCAAATTT
TCTTCCATACCCAGTTGGTGATTTGTTCTGTGTTTGTTTCAAAATTTTGT
TTTTATGGGGAGATTGGACTGAGTTCTTTATCTGGATACTTGATTTGAGT
CTAAGTTTGGTGCTTTCTTTGTTTTTTCTTTTTGGGTATTTAGTGCTGAG
AATGATGTCAATGACAAGCCACAATCTTGATTTTGGAAGAAGTGTACTTG
ATTTGGTGGCTTGTGGGTGTTCTAGTAGCGCCTCTATTCATAGGAGTTCA
GTGAGAAAAATTGCAATGACAGGTTCTAGGAAGAGTAACAGGGACTGTGG
TGCTAGGAGATTGGTTTGTTGTAGGCAAAACCTTGCTCGTTGTCGAGTTT
ATTCCACCAAAACACCTGAGACTCTACTTAATGTTGGCCAAATTCCTCCA
GCGGTTTTGAATTTGAAGGAAAAGTCAAGAAGCCCAATTTCTCTGGCAAA
TATTTTTGAAGTGGTTGCTGAGGACCTTCAGACACTTAATCAGAATCTCA
AGTCTATTGTTGGTGCGGAAAACCCAGTTTTAATGTCTGCGGCCGAGCAG
ATCTTTGGTGCTGGTGGTAAGAGGCTGAGACCAGCTTTGGTGTTCCTAGT
GTCAAGGGCTACAGCAGAATTAGTTGGGTTGAAAGAACTGACCACAAAGC
ATCGTCGTTTAGCTGAAATCATTGAGATGATTCATACTGCAAGTTTGATA
CATGATGATGTGTTAGATGAAAGTGACATGCGAAGAGGTCAGGAAACTGT
TCACCAATTGTATGGC
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