CK939278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_SYNY3 (Prenyl transferase OS=Synechocystis sp. (strain PCC 6803) GN=preA PE=3 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 1.288e-27 Identity = 64/109 (58.72%), Postives = 84/109 (77.06%), Query Frame = 1 Query: 487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813 IS ++F V +DL+ L NLK +VGA +P+L +AAE +F AGGKR+RPA+V LVSRAT + +ELT +HRRLAEI EMIHTASL+HDDV+DE+D+RR TV+ L+ Sbjct: 2 ISTTSLFAPVDQDLRLLTDNLKRLVGARHPILGAAAEHLFEAGGKRVRPAIVLLVSRAT---LLDQELTARHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLF 107
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_CYAPA (Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.145e-26 Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 1 Query: 490 SLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 S+ NI V +L L +NLK +VG+ +P+L +A+E +F A GKR RPA+V L+S+AT E + +T++HRRLAEI E+IHTASL+HDD+LDESD+RRG TVH +G Sbjct: 3 SITNILAPVENELDLLTKNLKKLVGSGHPILSAASEHLFSASGKRPRPAIVLLISKATMEN---EIITSRHRRLAEITEIIHTASLVHDDILDESDVRRGIPTVHSDFG 108
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_PORYE (Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.333e-24 Identity = 54/105 (51.43%), Postives = 81/105 (77.14%), Query Frame = 1 Query: 499 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813 ++F V ++L +L +NLK++ G +P+L +AA+ +F AGGKR+RPALVFLV++AT+E +++ T +RLAEI E+IHTASL+HDD++DE RRG +TVH L+ Sbjct: 6 SLFYPVEQELCSLEKNLKAVAGTRHPILYAAAKHLFDAGGKRVRPALVFLVAKATSE---KQDINTGQKRLAEITEIIHTASLVHDDIIDECTTRRGVKTVHNLF 107
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_PORPU (Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24 Identity = 53/106 (50.00%), Postives = 81/106 (76.42%), Query Frame = 1 Query: 496 ANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813 +++F + ++L ++ NLKS+ G +P+L +AA+ +F AGGKRLRPA+V LV+++T+E +E+ RRLAEI E+IHTASL+HDDV+DE RRG++TVH+L+ Sbjct: 5 SSLFHPIEKELYSVEHNLKSVAGTRHPILYAAAKHLFEAGGKRLRPAIVLLVAKSTSE---QQEIKPGQRRLAEITEIIHTASLVHDDVIDECSTRRGEKTVHKLF 107
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: PREA_CYACA (Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17 Identity = 43/101 (42.57%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 514 VAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 V EDL + Q L ++ NP+L +AA+ + K++RPA+V LV++A + K++ T +RLAE+ E+IHTA+L+HDDV+DES +RRG ++V++ +G Sbjct: 11 VKEDLLNIEQTLNKLIKVNNPILSAAAKHLLIVESKKIRPAIVLLVAKAIDKN---KKIKTSQQRLAEVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFG 108
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_HAEIN (Octaprenyl-diphosphate synthase OS=Haemophilus influenzae GN=ispB PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.359e-13 Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 472 KSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 K + +S+ I ++ D+Q +NQN+ + + ++ P++ I GGKR+RP + L +R+ G +T A +E IHTASL+HDDV+DESDMRRG+ T + +G Sbjct: 2 KKQDLMSIDEIQKLADPDMQKVNQNILAQLNSDVPLIGQLGFYIVQGGGKRIRPLIAVLAARSLG-FEGSNSITC-----ATFVEFIHTASLLHDDVVDESDMRRGRATANAEFG 110
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_SHIFL (Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13 Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 ++L I E+ A+D+ +N + + ++ ++ I GGKR+RP + L +RA VG + H +A +IE IHTA+L+HDDV+DESDMRRG+ T + +G Sbjct: 1 MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARA----VGYEG--NAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFG 104
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: ISPB_ECOLI (Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12) GN=ispB PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13 Identity = 41/110 (37.27%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 487 ISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 ++L I E+ A+D+ +N + + ++ ++ I GGKR+RP + L +RA VG + H +A +IE IHTA+L+HDDV+DESDMRRG+ T + +G Sbjct: 1 MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGGKRIRPMIAVLAARA----VGYEG--NAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFG 104
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: DPS1_DICDI (Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.529e-12 Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1 Query: 502 IFEVVAEDLQTLNQNLKSIVG---------------AENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 813 IF+VV DL + N+ + +P+L S + F GKR+RP +V L+S+A + V +L +LAEI+EMIHTASL+HDDV+DE+ RR +++ Y Sbjct: 129 IFKVVENDLSNMTHNIMKTITDGVSANSTYSPSPSKKTHPILSSISSYYFELKGKRIRPTIVLLLSKALSSTVHGSQL-----KLAEIVEMIHTASLVHDDVIDEASTRRDVISINHSY 242
BLAST of CK939278 vs. ExPASy Swiss-Prot
Match: DPS1_MOUSE (Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12 Identity = 42/147 (28.57%), Postives = 83/147 (56.46%), Query Frame = 1 Query: 379 NLARCRVYSTKTPETLLNVGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRA-TAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYG 816 +L + + ++ T ++ Q PA+ + ++ ++S ++ F++ DL+ L ++++ + L +E F GK RP +V L++RA +E+ R +A + EMIHTA+L+HDDV+D++ RRG+ TV++++G Sbjct: 49 SLMKILMSASPTMHSISQFHQRTPAMCSCRQ-TQSGEKYSDPFKLGWRDLKGLYEDIRKELHISTRELKDMSEYYFDGKGKAFRPIIVVLMARACNIHHNNAREMQASQRSIALVAEMIHTATLVHDDVIDDASSRRGKHTVNKIWG 194 The following BLAST results are available for this feature:
BLAST of CK939278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939278 ID=CK939278; Name=CK939278; organism=Citrus sinensis; type=EST; length=816bpback to top |