CX078338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 1.558e-66 Identity = 118/127 (92.91%), Postives = 124/127 (97.64%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 383 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPME+ + I NASGVKGCAYCGGLGHRIRDCPKLEHQKS+AI++SR+DYFGSGGYRGEI Sbjct: 465 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETIANASGVKGCAYCGGLGHRIRDCPKLEHQKSVAISNSRKDYFGSGGYRGEI 591
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 241.121 bits (614), Expect = 2.106e-63 Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 383 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQ+ETTLLDLKHLL+EAKQRIPPVLAELNDP+ED + + SGVKGCAYCGGLGHR+ DCPKLEHQKSMAIA SRRDY+G GGYRGEI Sbjct: 501 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAELNDPLEDEETMAKESGVKGCAYCGGLGHRVTDCPKLEHQKSMAIAGSRRDYYGGGGYRGEI 627
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH43_ARATH (Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis thaliana GN=RH43 PE=2 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 1.971e-61 Identity = 110/127 (86.61%), Postives = 117/127 (92.13%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 383 DIQHVINYDMP EIENYVHRIGRTGRCGKTGIATTFINKNQSE TLLDLKHLLQEAKQRIPPVLAELN PME+ + I NASGVKGCAYCGGLGHRI CPK EHQKS+AI+SSR+D+FGS GYRGE+ Sbjct: 416 DIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV 542
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 1.416e-51 Identity = 97/128 (75.78%), Postives = 109/128 (85.16%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVD-AITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGGYRGEI 383 DIQHVINYDMPAEIENYVHRIGRTGR GKTG+ATTFINKNQ+ETTLLDLK LL E+KQR+PP+LA+L+DP ED AI SGVKGCA+CGGLGHRI CPK + Q S+ +A +R DYFG GGYRGEI Sbjct: 492 DIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTETTLLDLKQLLIESKQRLPPILADLDDPQEDDKVAIAQQSGVKGCAFCGGLGHRIEACPKQQLQNSVTLARARSDYFGGGGYRGEI 619
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX41_HUMAN (Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 1.573e-34 Identity = 73/117 (62.39%), Postives = 89/117 (76.07%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 353 IQHVINYDMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PPVL L+ E ++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY Sbjct: 501 IQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDE---SMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 5.977e-34 Identity = 71/132 (53.79%), Postives = 91/132 (68.94%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASG----------VKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368 +IQHVIN+DMP EIENY+HRIGRTGR G G+ATTFINKN +E+ LLDLK+LL EAKQ++PP L E+ D + + + + +G K C YC G GHR+ +CPKL+ Q A +RD+FGSGG Sbjct: 542 EIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQYLQKLQDRNGNTGGGADDDDTKPCEYCDGRGHRLVNCPKLKKQ-----AGPKRDFFGSGG 668
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.019e-33 Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 3 Query: 6 IQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAS-SRRDY 353 IQHVINYDMP EIENYVHRIGRTGR G TGIATTFINK E+ L+DLK LL EAKQ++PP L L+ E ++ + G +GCA+CGGLGHRI DCPKLE ++ +++ R+DY Sbjct: 501 IQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPGLQVLHCGDE---SMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 6.838e-30 Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEH-QKSMAIASSRRDYFGS 362 ++QHVINYDMP +IENYVHRIGRTGR G+ATT INK ++ LLDLKHLL E KQ +P L EL E S GC YCGGLGHRI +CPKLE Q A RRDY + Sbjct: 496 NVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDLGDS--HGCTYCGGLGHRITECPKLEAVQNKQASNIGRRDYLSN 614
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DDX3X_MOUSE (ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3) HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14 Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITNASGVKGCAYCGGLGHRIRDCPKLEHQKSMAIASSRRDYFGSGG 368 +++HVIN+D+P++IE YVHRIGRTGR G G+AT+F N+ T DL LL EAKQ +P L N E ++ K + GG G RD + S + +SSR SGG Sbjct: 509 NVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINIT-KDLLDLLVEAKQEVPSWLE--NMAFEHHYKGSSRGRSKSSRFSGGFG--ARDYRQSSGASSSSFSSSRASSSRSGG 625
BLAST of CX078338 vs. ExPASy Swiss-Prot
Match: DED1_MAGGR (ATP-dependent RNA helicase DED1 OS=Magnaporthe grisea GN=DED1 PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.384e-14 Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3 Query: 3 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVL 194 ++ HVINYD+P +I++YVHRIGRTGR G TGIAT F + + +L ++L+EAKQ IPP L Sbjct: 517 NVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDNSGVAQELLNILKEAKQDIPPFL 580 The following BLAST results are available for this feature:
BLAST of CX078338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078338 ID=CX078338; Name=CX078338; organism=Citrus sinensis; type=EST; length=500bpback to top |