CK938363

Overview
NameCK938363
Unique NameCK938363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL--APRAVEK 156
            G ++VL YEDKDGDWMLVGDVPWEMFID CK+L+IMK  DAIGL  APRA+EK
Sbjct:  281 GKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEK 333          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.982e-17
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            GS+ V  YEDKDGDWMLVGDVPW+MF+++CKRLRIMK ++AIGLAPRA +K
Sbjct:  181 GSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.982e-17
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            GS+ V  YEDKDGDWMLVGDVPW+MF+++CKRLRIMK ++AIGLAPRA +K
Sbjct:  181 GSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.588e-17
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            G+E VL YEDKD DWMLVGDVPW MF D+C+RLRIMK +DA+GLAPRA +K
Sbjct:  211 GTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDK 261          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 35/50 (70.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVE 153
            G+E+V  YEDKDGDWMLVGDVPW+MF++TC+RLR+MKS++A+ LAPRA +
Sbjct:  150 GTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAI--GLAPRAVEKC 159
            S++V  YEDKDGDWMLVGDVPWEMF+++CKRLRIMK  +AI  GLAPRA+ KC
Sbjct:  187 SDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKC 239          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 34/48 (70.83%), Postives = 45/48 (93.75%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRA 147
            G+E+V  YEDKDGDWMLVGDVPW+MF++TC+RLR+MKS++A+ LAPR+
Sbjct:  164 GNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA23_ORYSJ (Auxin-responsive protein IAA23 OS=Oryza sativa subsp. japonica GN=IAA23 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 32/47 (68.09%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPR 144
            G+E+V  YEDKDGDWMLVGDVPW+MF+++CKR+R+MKS++A+ L+PR
Sbjct:  143 GAEYVPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMKSSEAVNLSPR 189          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 GGSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            G S+FVL YEDK+GDWMLVGDVPW MFI++ KRLRIM +++A GLAPR  E+
Sbjct:  179 GSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 GGSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVE 153
            G SEFVL YEDK+GDWMLVGDVPW MFI++ KRLR+MK+++A GLA R  E
Sbjct:  187 GSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE 237          
The following BLAST results are available for this feature:
BLAST of CK938363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA9_ARATH1.162e-1777.36Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA13_ORYSJ1.982e-1774.51Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI1.982e-1774.51Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA21_ORYSJ2.588e-1774.51Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA1_ORYSJ9.836e-1770.00Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
AUX28_SOYBN9.836e-1773.58Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA15_ORYSJ3.738e-1670.83Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA23_ORYSJ1.855e-1568.09Auxin-responsive protein IAA23 OS=Oryza sativa sub... [more]
IAA12_ARATH5.397e-1569.23Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA13_ARATH9.206e-1570.59Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_G09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938363 ID=CK938363; Name=CK938363; organism=Citrus sinensis; type=EST; length=596bp
GGGGGCTCAGAATTCGTTCTCGCTTATGAAGACAAAGATGGGGATTGGAT
GCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGATACATGCAAGAGGT
TGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGGGCTGTG
GAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTTGGTATT
CATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAAATAACA
TGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTTCTGTGT
TACCACATTACTACGTTTACTGTGATGGATTTTCATGTTCTGTAAGCTGT
GATTGTTGTCTTGTTATTAAAATTATAAAACTCTCGTAGACCTTGTATTT
TGGAGTGAACCTCTGAGATTGGATCTCCTCAAGGAGTTCTGACAAGTTCC
TGTTCCCAACAGGTACCTTAGTTTGTAAAGTGCGTTGTTTGTTGAACTAC
TTTGTTATGCGTGCTTGTTTGGTGAAAAAAAAAAAGACATCATCCATGTC
ATTAATTCGTAACCCTGTCTCNNANAAAAAAAAAAAAAAAAAAAAA
back to top