CK938363

Overview
NameCK938363
Unique NameCK938363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2216 contig Csv1_Contig2216:1089..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA3_ARATH (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana GN=IAA3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            GS+FV  YEDKDGDWML+GDVPWEMFI TCKRLRIMK ++A GL
Sbjct:  142 GSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA4_PEA (Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA4/5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            GSE+   YEDKDGDWMLVGDVPW+MF+ +CKRLRIMK T+A GL
Sbjct:  142 GSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL 185          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA4_ARATH (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            GS+FV  YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++  GL
Sbjct:  138 GSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGL 181          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 30/49 (61.22%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            E+VL YEDKD DWMLVGD+PW++F  +C++LRIM+ +DA G+APR++E+
Sbjct:  228 EYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 29/49 (59.18%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            E+VL YEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  218 EYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 29/49 (59.18%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLAPRAVEK 156
            E+VL YEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  219 EYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDA--IGLAPRAVEK 156
            E+V  YEDKDGDWML GDVPW MF+++CKRLRIMK +DA   GL PR V++
Sbjct:  147 EYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: AX22B_PHAAU (Auxin-induced protein 22B OS=Phaseolus aureus GN=AUX22B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            GSE+   YEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++A GL
Sbjct:  149 GSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGL 192          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: AX22D_PHAAU (Auxin-induced protein 22D OS=Phaseolus aureus GN=AUX22D PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            GSE+   YEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++A GL
Sbjct:  147 GSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKGSEAKGL 190          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDA--IGLAPR 144
            SE V  YEDKDGDWMLVGDVPWEMF+++CKRLRIMK +DA   GL P+
Sbjct:  136 SEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPK 183          
The following BLAST results are available for this feature:
BLAST of CK938363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA3_ARATH1.202e-1479.55Auxin-responsive protein IAA3 OS=Arabidopsis thali... [more]
IAA4_PEA4.569e-1475.00Auxin-induced protein IAA4 OS=Pisum sativum GN=IAA... [more]
IAA4_ARATH4.569e-1475.00Auxin-responsive protein IAA4 OS=Arabidopsis thali... [more]
IAA19_ORYSJ4.569e-1461.22Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSJ1.018e-1359.18Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.018e-1359.18Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA19_ARATH1.329e-1366.67Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
AX22B_PHAAU1.329e-1372.73Auxin-induced protein 22B OS=Phaseolus aureus GN=A... [more]
AX22D_PHAAU1.736e-1372.73Auxin-induced protein 22D OS=Phaseolus aureus GN=A... [more]
AUX22_SOYBN1.736e-1372.92Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938363 ID=CK938363; Name=CK938363; organism=Citrus sinensis; type=EST; length=596bp
GGGGGCTCAGAATTCGTTCTCGCTTATGAAGACAAAGATGGGGATTGGAT
GCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGATACATGCAAGAGGT
TGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGGGCTGTG
GAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTTGGTATT
CATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAAATAACA
TGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTTCTGTGT
TACCACATTACTACGTTTACTGTGATGGATTTTCATGTTCTGTAAGCTGT
GATTGTTGTCTTGTTATTAAAATTATAAAACTCTCGTAGACCTTGTATTT
TGGAGTGAACCTCTGAGATTGGATCTCCTCAAGGAGTTCTGACAAGTTCC
TGTTCCCAACAGGTACCTTAGTTTGTAAAGTGCGTTGTTTGTTGAACTAC
TTTGTTATGCGTGCTTGTTTGGTGAAAAAAAAAAAGACATCATCCATGTC
ATTAATTCGTAACCCTGTCTCNNANAAAAAAAAAAAAAAAAAAAAA
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