CK938363

Overview
NameCK938363
Unique NameCK938363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2216 contig Csv1_Contig2216:1089..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA6_ARATH (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana GN=IAA6 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIG 132
            E+++ YEDKD DWMLVGDVPW+MF ++CKRLRI+K +DA G
Sbjct:  143 EYIIIYEDKDRDWMLVGDVPWQMFKESCKRLRIVKRSDATG 183          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA1_ARATH (Auxin-responsive protein IAA1 OS=Arabidopsis thaliana GN=IAA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1
Query:    4 GSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDA 126
            GS FV  YEDKDGDWMLVGDVPW+MF  +C++LRIMK ++A
Sbjct:  124 GSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSEA 164          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA11_ARATH (Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 GGSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGLA 138
            G S  VL YEDK+GDWMLVGDVPW MFI + +RLRIMK+++A G A
Sbjct:  197 GSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATGKA 242          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   10 EFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDA 126
            +F +AYEDKDGD MLVGDVPWEMFI +CK+LRIMK ++A
Sbjct:  180 QFAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 GGSEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL 135
            G SE+++ Y+DKDGDWMLVGDVPW+MF+ +  RLRIMK++   G+
Sbjct:  215 GSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSTDAIGL-APRAVE 153
            SEF + Y+DKDGD MLVGDVP++MF  TCK+LRIMK ++A GL +PR ++
Sbjct:  176 SEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          
BLAST of CK938363 vs. ExPASy Swiss-Prot
Match: IAA5_ARATH (Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query:    7 SEFVLAYEDKDGDWMLVGDVPWEMFIDTCKRLRIMK 114
            SE V  YEDKDGDWML GDVPWEMF+ +CKRLRIMK
Sbjct:  122 SECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMK 157          
The following BLAST results are available for this feature:
BLAST of CK938363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
IAA6_ARATH1.244e-1168.29Auxin-responsive protein IAA6 OS=Arabidopsis thali... [more]
IAA1_ARATH1.625e-1170.73Auxin-responsive protein IAA1 OS=Arabidopsis thali... [more]
IAA11_ARATH1.625e-1167.39Auxin-responsive protein IAA11 OS=Arabidopsis thal... [more]
IAA24_ORYSJ2.122e-1174.36Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA10_ARATH3.620e-1160.00Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA12_ORYSJ6.175e-1162.00Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]
IAA5_ARATH8.065e-1180.56Auxin-responsive protein IAA5 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938363 ID=CK938363; Name=CK938363; organism=Citrus sinensis; type=EST; length=596bp
GGGGGCTCAGAATTCGTTCTCGCTTATGAAGACAAAGATGGGGATTGGAT
GCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGATACATGCAAGAGGT
TGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGGGCTGTG
GAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTTGGTATT
CATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAAATAACA
TGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTTCTGTGT
TACCACATTACTACGTTTACTGTGATGGATTTTCATGTTCTGTAAGCTGT
GATTGTTGTCTTGTTATTAAAATTATAAAACTCTCGTAGACCTTGTATTT
TGGAGTGAACCTCTGAGATTGGATCTCCTCAAGGAGTTCTGACAAGTTCC
TGTTCCCAACAGGTACCTTAGTTTGTAAAGTGCGTTGTTTGTTGAACTAC
TTTGTTATGCGTGCTTGTTTGGTGAAAAAAAAAAAGACATCATCCATGTC
ATTAATTCGTAACCCTGTCTCNNANAAAAAAAAAAAAAAAAAAAAA
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