CX043405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_PASMU (tRNA-dihydrouridine synthase A OS=Pasteurella multocida GN=dusA PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.741e-39 Identity = 86/177 (48.59%), Postives = 114/177 (64.41%), Query Frame = -2 Query: 195 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 725 +P+ LQ+GGS+ LA+ ++A Y EINLN GCPS +V +G FG LM V + +S + ++PV+VK RIG+DD DSY LC+F+ KV + FIIH+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T++E+ L+ VMVGR AYQ Sbjct: 64 NPVALQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAG-CQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQ 237
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XYLFA (tRNA-dihydrouridine synthase A OS=Xylella fastidiosa GN=dusA PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 6.615e-39 Identity = 89/206 (43.20%), Postives = 122/206 (59.22%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL--------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQ 770 EM+ A+ +IY P+ LQ+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +AA +VPV+VKCR+GV++ D Y + F+ VS S +R ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ Sbjct: 47 EMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQA-GSFGARLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRERPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQ 244
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XYLFT (tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38 Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL--------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQ 770 EM+ A+ +IY P+ LQ+GGS LAKA +A + Y EINLNCGCPS +V G FG LM +P V + ++ +AA +VPV+VKCR+GV++ D Y + F+ V S +R ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L LNGGI +V+ G H VM+GRAAYQ Sbjct: 47 EMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQA-GSFGACLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRECPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQ 244
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_HAEIN (tRNA-dihydrouridine synthase A OS=Haemophilus influenzae GN=dusA PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.514e-38 Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ A II+ + + +P+ LQ+GGS+ + L +LA Y EINLN GCPS +V +G FG LM V + + + + +PV+VK RIG+D+ DSY LCDFI KV + FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT +NGGI T++E+ L+ VMVGR AYQ Sbjct: 42 EMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKG-CQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQ 237
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_SHEON (tRNA-dihydrouridine synthase A OS=Shewanella oneidensis GN=dusA PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38 Identity = 88/199 (44.22%), Postives = 121/199 (60.80%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ I++ +G+ HP+ LQ+GGSN LA+ +LA YDE+NLN GCPS +V +G FG LM +P+ V E + + ++PV+VK RIG+D+ DSY L FI V + FIIH+RKA L G+SP ENR IPPL Y+ Y L RD+P L ++NGGI ++++ L+ VMVGR AYQ Sbjct: 45 EMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQ 240
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_YERPE (tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38 Identity = 85/188 (45.21%), Postives = 114/188 (60.64%), Query Frame = -2 Query: 195 AETIIYQQGNLHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 758 A+ + Y + + HP+ LQ+GGS+ LA +LA Y+EINLN GCPS +V +G FG LM + V + + + +PV+VK RIG+D DSY LC+F+ V+ F IH+RKA L+G+SP ENR +PPL YE Y L RDFP LT +NGG+ T+ E L K VM+GR AYQ Sbjct: 63 ADYLAYSEQD-HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQ 247
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XANCP (tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv. campestris GN=dusA PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.779e-37 Identity = 82/176 (46.59%), Postives = 113/176 (64.20%), Query Frame = -2 Query: 198 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 725 HP+ LQ+GGS+ LA+A ++A A+ YDEINLNCGCPS +V G FG LM +P V + ++ + A T +PV+VKCR+GVDD D Y FI +V ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI +V E + A + VM+GRAAY Sbjct: 67 HPLALQLGGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGIASV-EASLAHLQHTDGVMLGRAAY 239
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XANAC (tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri GN=dusA PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37 Identity = 80/176 (45.45%), Postives = 113/176 (64.20%), Query Frame = -2 Query: 198 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 725 HP+ LQ+GGS+ LA+A +A + +DEINLNCGCPS +V G FG LM +P V E ++ + A T++P++VKCR+GVDD D Y F+ +V + ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L LNGGI V+ A L+ A VM+GRAAY Sbjct: 66 HPLALQLGGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQA-GRFGACLMREPALVAECVAAMCAATHLPITVKCRLGVDDDDDYALFARFVDQVVAAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPGLPVVLNGGIVAVEPAIAHLQH-ADGVMLGRAAY 238
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUS2_SYNY3 (Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=dus2 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.073e-36 Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = -2 Query: 195 EMLAAETIIY--QQGNLH------PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ A+ I++ +Q L+ P+ LQ+GG + LA+ + + YDEINLN GCPS +V G FG LM P V + +S + +PV+VK RIG+D DSY L F+ V++ R F +H+RKA L G+SP ENRTIPPL+YE Y L +DFP L +NGGI +++ L VMVGRAAY+ Sbjct: 42 EMITAQAILHGDRQRLLNFSPEEKPVALQLGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQKAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQR-FTVHARKAWLQGLSPKENRTIPPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHL-SHVDAVMVGRAAYE 238
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_PSEPK (tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain KT2440) GN=dusA PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.437e-35 Identity = 82/187 (43.85%), Postives = 109/187 (58.29%), Query Frame = -2 Query: 198 AETIIYQQGNLHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 758 A + + HP+ LQ+GGS +LA LA YDE+NLN GCPS +V + G LM P V + + + + PV+VK RIG++ DSY +L DF+ +V R F +H+R A+L G+SP ENR IPPL+Y+ L RDFPDL LNGGI T+DE A L + VM+GR AY Sbjct: 61 AHRFLRHDASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPALVADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAG-CRSFTVHARIAILEGLSPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHL-ETFDGVMLGREAY 244 The following BLAST results are available for this feature:
BLAST of CX043405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043405 ID=CX043405; Name=CX043405; organism=Citrus sinensis; type=EST; length=771bpback to top |