CX043405

Overview
NameCX043405
Unique NameCX043405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_PASMU (tRNA-dihydrouridine synthase A OS=Pasteurella multocida GN=dusA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.741e-39
Identity = 86/177 (48.59%), Postives = 114/177 (64.41%), Query Frame = -2
Query:  195 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 725
            +P+ LQ+GGS+   LA+  ++A    Y EINLN GCPS +V  +G FG  LM     V + +S +    ++PV+VK RIG+DD DSY  LC+F+ KV      + FIIH+RKA L+G+SP ENR IPPL YE  Y L RDFP L  ++NGGI T++E+   L+     VMVGR AYQ
Sbjct:   64 NPVALQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVSAMQTEVSIPVTVKTRIGIDDLDSYEFLCEFVQKVHEAG-CQEFIIHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPHLLMSINGGIKTLEEMQQHLQY-MDGVMVGREAYQ 237          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XYLFA (tRNA-dihydrouridine synthase A OS=Xylella fastidiosa GN=dusA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.615e-39
Identity = 89/206 (43.20%), Postives = 122/206 (59.22%), Query Frame = -2
Query:  195 EMLAAETIIYQQGNL--------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQ 770
            EM+ A+ +IY              P+ LQ+GGS    LAKA  +A  + Y EINLNCGCPS +V   G FG  LM +P  V + ++ +AA  +VPV+VKCR+GV++ D Y +   F+  VS  S +R  ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L   LNGGI +V+        G  H      VM+GRAAYQ
Sbjct:   47 EMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPALLAKAARIAVDWGYSEINLNCGCPSDRVQA-GSFGARLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVSRASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRERPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQ 244          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XYLFT (tRNA-dihydrouridine synthase A OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=dusA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.925e-38
Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = -2
Query:  195 EMLAAETIIYQQGNL--------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHH------VMVGRAAYQ 770
            EM+ A+ +IY              P+ LQ+GGS    LAKA  +A  + Y EINLNCGCPS +V   G FG  LM +P  V + ++ +AA  +VPV+VKCR+GV++ D Y +   F+  V   S +R  ++H+R A L G+SP ENR IPPL+Y++ Y L R+ P+L   LNGGI +V+        G  H      VM+GRAAYQ
Sbjct:   47 EMVHAKAVIYGDRERLLGFASVEQPVALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQA-GSFGACLMREPALVADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLSPKENREIPPLRYDWVYRLKRECPELAVVLNGGITSVE-------AGLDHLLMVDGVMLGRAAYQ 244          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_HAEIN (tRNA-dihydrouridine synthase A OS=Haemophilus influenzae GN=dusA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.514e-38
Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = -2
Query:  195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770
            EM+ A  II+ + +        +P+ LQ+GGS+ + L    +LA    Y EINLN GCPS +V  +G FG  LM     V + +  + +   +PV+VK RIG+D+ DSY  LCDFI KV      + FIIH+RKA L+G+SP ENR IPPL Y   Y L RDFP LT  +NGGI T++E+   L+     VMVGR AYQ
Sbjct:   42 EMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQ-NGMFGACLMAKADLVADCVEQMQSAVKIPVTVKTRIGIDELDSYEFLCDFIEKVQGKG-CQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQLKRDFPHLTIAINGGIKTIEEMKQHLQY-VDGVMVGREAYQ 237          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_SHEON (tRNA-dihydrouridine synthase A OS=Shewanella oneidensis GN=dusA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.283e-38
Identity = 88/199 (44.22%), Postives = 121/199 (60.80%), Query Frame = -2
Query:  195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770
            EM+    I++ +G+        HP+ LQ+GGSN   LA+  +LA    YDE+NLN GCPS +V  +G FG  LM +P+ V E +  +    ++PV+VK RIG+D+ DSY  L  FI  V +      FIIH+RKA L G+SP ENR IPPL Y+  Y L RD+P L  ++NGGI ++++    L+     VMVGR AYQ
Sbjct:   45 EMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPELVAECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH-LDGVMVGREAYQ 240          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_YERPE (tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.551e-38
Identity = 85/188 (45.21%), Postives = 114/188 (60.64%), Query Frame = -2
Query:  195 AETIIYQQGNLHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 758
            A+ + Y + + HP+ LQ+GGS+   LA   +LA    Y+EINLN GCPS +V  +G FG  LM +   V + +  +     +PV+VK RIG+D  DSY  LC+F+  V+       F IH+RKA L+G+SP ENR +PPL YE  Y L RDFP LT  +NGG+ T+ E    L K    VM+GR AYQ
Sbjct:   63 ADYLAYSEQD-HPVALQLGGSDPQALAHCAKLAEQRGYNEINLNVGCPSDRVQ-NGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQTVAERGECEIFTIHARKAWLSGLSPKENREVPPLDYERVYQLKRDFPALTIAINGGVKTLAEAKEHL-KHLDGVMMGREAYQ 247          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XANCP (tRNA-dihydrouridine synthase A OS=Xanthomonas campestris pv. campestris GN=dusA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.779e-37
Identity = 82/176 (46.59%), Postives = 113/176 (64.20%), Query Frame = -2
Query:  198 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 725
            HP+ LQ+GGS+   LA+A ++A A+ YDEINLNCGCPS +V   G FG  LM +P  V + ++ + A T +PV+VKCR+GVDD D Y     FI +V         ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L   LNGGI +V E + A  +    VM+GRAAY
Sbjct:   67 HPLALQLGGSDPALLAQAAQIAQAWGYDEINLNCGCPSDRVQA-GRFGACLMREPALVADCVAAMCAATALPVTVKCRLGVDDDDDYAVFAGFIDQVVGAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPALPVVLNGGIASV-EASLAHLQHTDGVMLGRAAY 239          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_XANAC (tRNA-dihydrouridine synthase A OS=Xanthomonas axonopodis pv. citri GN=dusA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.086e-37
Identity = 80/176 (45.45%), Postives = 113/176 (64.20%), Query Frame = -2
Query:  198 HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 725
            HP+ LQ+GGS+   LA+A  +A  + +DEINLNCGCPS +V   G FG  LM +P  V E ++ + A T++P++VKCR+GVDD D Y     F+ +V +       ++H+R A L G+SP ENR +PPL+Y++ Y L ++ P L   LNGGI  V+   A L+  A  VM+GRAAY
Sbjct:   66 HPLALQLGGSDPALLAQAAAIAQEWGFDEINLNCGCPSDRVQA-GRFGACLMREPALVAECVAAMCAATHLPITVKCRLGVDDDDDYALFARFVDQVVAAGAAM-VVVHARNAWLKGLSPKENREVPPLRYDWAYRLKQERPGLPVVLNGGIVAVEPAIAHLQH-ADGVMLGRAAY 238          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUS2_SYNY3 (Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=dus2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.073e-36
Identity = 86/200 (43.00%), Postives = 118/200 (59.00%), Query Frame = -2
Query:  195 EMLAAETIIY--QQGNLH------PIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770
            EM+ A+ I++  +Q  L+      P+ LQ+GG +   LA+   +   + YDEINLN GCPS +V   G FG  LM  P  V + +S +     +PV+VK RIG+D  DSY  L  F+  V++    R F +H+RKA L G+SP ENRTIPPL+YE  Y L +DFP L   +NGGI   +++   L      VMVGRAAY+
Sbjct:   42 EMITAQAILHGDRQRLLNFSPEEKPVALQLGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQS-GNFGACLMAQPDLVAQCVSAMQKAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAGCQR-FTVHARKAWLQGLSPKENRTIPPLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHL-SHVDAVMVGRAAYE 238          
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_PSEPK (tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain KT2440) GN=dusA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.437e-35
Identity = 82/187 (43.85%), Postives = 109/187 (58.29%), Query Frame = -2
Query:  198 AETIIYQQGNLHPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAY 758
            A   +    + HP+ LQ+GGS   +LA    LA    YDE+NLN GCPS +V  +   G  LM  P  V + +  +    + PV+VK RIG++  DSY +L DF+ +V      R F +H+R A+L G+SP ENR IPPL+Y+    L RDFPDL   LNGGI T+DE  A L +    VM+GR AY
Sbjct:   61 AHRFLRHDASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNN-MIGACLMAHPALVADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAG-CRSFTVHARIAILEGLSPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHL-ETFDGVMLGREAY 244          
The following BLAST results are available for this feature:
BLAST of CX043405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DUSA_PASMU1.741e-3948.59tRNA-dihydrouridine synthase A OS=Pasteurella mult... [more]
DUSA_XYLFA6.615e-3943.20tRNA-dihydrouridine synthase A OS=Xylella fastidio... [more]
DUSA_XYLFT1.925e-3842.72tRNA-dihydrouridine synthase A OS=Xylella fastidio... [more]
DUSA_HAEIN2.514e-3845.73tRNA-dihydrouridine synthase A OS=Haemophilus infl... [more]
DUSA_SHEON3.283e-3844.22tRNA-dihydrouridine synthase A OS=Shewanella oneid... [more]
DUSA_YERPE9.551e-3845.21tRNA-dihydrouridine synthase A OS=Yersinia pestis ... [more]
DUSA_XANCP2.779e-3746.59tRNA-dihydrouridine synthase A OS=Xanthomonas camp... [more]
DUSA_XANAC8.086e-3745.45tRNA-dihydrouridine synthase A OS=Xanthomonas axon... [more]
DUS2_SYNY33.073e-3643.00Probable tRNA-dihydrouridine synthase 2 OS=Synecho... [more]
DUSA_PSEPK4.437e-3543.85tRNA-dihydrouridine synthase A OS=Pseudomonas puti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10H03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10H03-P6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043405 ID=CX043405; Name=CX043405; organism=Citrus sinensis; type=EST; length=771bp
TTTAAATCTAAAAAAAAATCTCTATTTATTAGATAATAGAGAATATACAA
AGAAATGAAATGGTGATGCCACATCACCTCCTCAAGTCCCAACTTTATAT
ATATATATAGATTAGAGCAAACAGAAAATCATTTAATGAACAAGACCAGT
TCAAAAGTTTTTGCTGATGTCAGAATCATTCATTATACATACTTCTGGTA
TGCAGCACGTCCAACCATAACATGGTGAGCACCTTTCCTTAGCGCAGCAT
TTACCTCATCAACTGTATTAATGCCTCCATTTAGTGTAAATGTCAAGTCT
GGAAAGTCACGCAAGAGGGCATAATAGTACTCATACTTCAAAGGAGGAAT
TGTTCGATTTTCAGCCGGGCTAATGCCATTGAGCAGTGCCTTCCGTGAAT
GTATGATGAAATGCCTAGTTGGGGATAAAGAAGAGACTTTATAGATGAAA
TCACAGAGCTGATTGTATGAATCGTGATCGTCGACACCAATTCGGCATTT
GACGCTAACAGGAACATTTGTGTTAGCAGCAATTACTGACATTGCCTCGC
CAACAAACTTTGGATCAAGCATAAGACTAACACCAAAGCACCCATGTCCA
GCTACTTTAGGACTAGGACATCCACAATTTAAATTGATTTCATCATAGTT
GTATGCATTGGCAAGTTCAGTCGCTTTGGCCAGGTTATCCAAGTTACTAC
CACCAATTTGAAGGACAATAGGATGCAAATTTCCCTGTTGATAAATAATT
GTCTCAGCTGCAAGCATCTCT
back to top