CX043405
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_SHIFL (tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 5.781e-43 Identity = 96/199 (48.24%), Postives = 125/199 (62.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQ Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQ 238
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_ECOLI (tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12) GN=dusA PE=3 SV=3) HSP 1 Score: 174.481 bits (441), Expect = 5.781e-43 Identity = 96/199 (48.24%), Postives = 125/199 (62.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQ Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQ 238
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_ECOL6 (tRNA-dihydrouridine synthase A OS=Escherichia coli O6 GN=dusA PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.781e-43 Identity = 96/199 (48.24%), Postives = 125/199 (62.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQ Sbjct: 43 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQ 239
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_ECO57 (tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA PE=3 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 5.781e-43 Identity = 96/199 (48.24%), Postives = 125/199 (62.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA+ +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E A L+ VMVGR AYQ Sbjct: 42 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQ 238
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_SALTI (tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.288e-42 Identity = 96/199 (48.24%), Postives = 123/199 (61.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQ Sbjct: 44 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFINTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQ 240
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_SALTY (tRNA-dihydrouridine synthase A OS=Salmonella typhimurium GN=dusA PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.682e-42 Identity = 96/199 (48.24%), Postives = 123/199 (61.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGS+ LA +LA A YDEINLN GCPS +V +G FG LM + + V + + + ++PV+VK RIG+DD DSY LCDFI VS FIIH+RKA L+G+SP ENR IPPL Y Y L RDFP LT ++NGGI +++E LR VMVGR AYQ Sbjct: 44 EMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDTVSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKEHLRH-MDGVMVGREAYQ 240
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_VIBPA (tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus GN=dusA PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.860e-41 Identity = 91/199 (45.73%), Postives = 123/199 (61.81%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGSN ++LAK +LA YDEINLN GCPS +V +G FG LM +P+ V + ++ + +VPV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ Sbjct: 36 EMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDLAKCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDVPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKQDFSHLTIAINGGVKSLEEAKVHLQH-LDGVMIGREAYQ 232
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_VIBCH (tRNA-dihydrouridine synthase A OS=Vibrio cholerae GN=dusA PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41 Identity = 91/199 (45.73%), Postives = 120/199 (60.30%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ GGSN +LA +LA YDEINLN GCPS +V +G FG LM +P V E ++ + A ++PV+VK RIG+DD DSY L FI V+ F IH+RKA L+G+SP ENR IPPL Y Y + RDFP LT +NGG+ +++E L+ VM+GR AYQ Sbjct: 36 EMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQ-NGRFGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH-LDGVMIGREAYQ 232
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_HAEDU (tRNA-dihydrouridine synthase A OS=Haemophilus ducreyi GN=dusA PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.574e-40 Identity = 92/199 (46.23%), Postives = 122/199 (61.31%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ A I++ + +L P+ LQ+GGS+ LA +L A Y EINLN GCPS +V +G FG LM + V + + + ++PV++K RIG+D DSY LCDFI K+ S + FI+H+RKA L+G+SP ENR IPPL YE Y L RDFP L ++NGGI T+DE+ L K VMVGR AYQ Sbjct: 39 EMITAPAILHAKYDLLEYDPAEQPVALQLGGSDPTQLANCAKLVQARGYTEINLNVGCPSDRVQ-NGMFGACLMANADLVADCIKAMQDVVDIPVTIKHRIGIDTLDSYAFLCDFIDKIQPYS--QDFIVHARKAWLSGLSPKENREIPPLDYERVYQLKRDFPQLNISINGGIKTIDEIKQHLTK-VDGVMVGREAYQ 233
BLAST of CX043405 vs. ExPASy Swiss-Prot
Match: DUSA_VIBVU (tRNA-dihydrouridine synthase A OS=Vibrio vulnificus GN=dusA PE=3 SV=2) HSP 1 Score: 165.622 bits (418), Expect = 2.685e-40 Identity = 88/199 (44.22%), Postives = 121/199 (60.80%), Query Frame = -2 Query: 195 EMLAAETIIYQQGNL-------HPIVLQIGGSNLDNLAKATELANAYNYDEINLNCGCPSPKVAGHGCFGVSLMLDPKFVGEAMSVIAANTNVPVSVKCRIGVDDHDSYNQLCDFIYKVSSLSPTRHFIIHSRKALLNGISPAENRTIPPLKYEYYYALLRDFPDLTFTLNGGINTVDEVNAALRKGAHHVMVGRAAYQ 770 EM+ II+ +G+ HP+ LQ+GGSN +LA +LA YDE+NLN GCPS +V +G FG LM +P+ V + ++ + ++PV+VK RIG+DD DSY L DF+ VS F IH+RKA L+G+SP ENR IPPL Y Y L +DF LT +NGG+ +++E L+ VM+GR AYQ Sbjct: 36 EMITTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQ-NGRFGACLMAEPQLVADCVAAMKEVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQH-LDGVMIGREAYQ 232 The following BLAST results are available for this feature:
BLAST of CX043405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043405 ID=CX043405; Name=CX043405; organism=Citrus sinensis; type=EST; length=771bpback to top |