EY665812

Overview
NameEY665812
Unique NameEY665812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 2.643e-83
Identity = 154/204 (75.49%), Postives = 171/204 (83.82%), Query Frame = 3
Query:   81 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVNENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            GA  S P++ F G  LKK  +        S++   FK+ A E++E KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA DII++GK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 212          

HSP 2 Score: 33.4982 bits (75), Expect = 2.643e-83
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1
Query:  673 KGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            KGKMCCL INDL+  +   GG    T V NQ
Sbjct:  210 KGKMCCLFINDLDAGAGRMGGTTQYT-VNNQ 239          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 292.738 bits (748), Expect = 1.192e-80
Identity = 152/208 (73.08%), Postives = 170/208 (81.73%), Query Frame = 3
Query:   81 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVNENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EV+E KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA D+I++GK
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGK 217          

HSP 2 Score: 29.6462 bits (65), Expect = 1.192e-80
Identity = 16/31 (51.61%), Postives = 18/31 (58.06%), Query Frame = 1
Query:  673 KGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            KGKM CL INDL+  +   GG    T V NQ
Sbjct:  215 KGKMSCLFINDLDAGAGRMGGTTQYT-VNNQ 244          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 9.991e-80
Identity = 148/203 (72.91%), Postives = 166/203 (81.77%), Query Frame = 3
Query:   81 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVNENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            GA  S P+  F G  +K        +K+ S   ++ A   E+++ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIRQRYREA DII +GK
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGK 208          

HSP 2 Score: 33.4982 bits (75), Expect = 9.991e-80
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1
Query:  673 KGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            KGKMCCL INDL+  +   GG    T V NQ
Sbjct:  206 KGKMCCLFINDLDAGAGRMGGTTQYT-VNNQ 235          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.216e-79
Identity = 146/203 (71.92%), Postives = 166/203 (81.77%), Query Frame = 3
Query:   81 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVNENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA D+I++GK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGK 211          

HSP 2 Score: 33.4982 bits (75), Expect = 2.216e-79
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1
Query:  673 KGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            KGKMCCL INDL+  +   GG    T V NQ
Sbjct:  209 KGKMCCLFINDLDAGAGRMGGTTQYT-VNNQ 238          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 1.856e-78
Identity = 143/211 (67.77%), Postives = 164/211 (77.73%), Query Frame = 3
Query:   48 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVNENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            A   PL+ NGS A  SVP+S F G+SLKK ++   PS   + S  + A  NE K T  D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREA D+I +GK
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGK 219          

HSP 2 Score: 30.8018 bits (68), Expect = 1.856e-78
Identity = 18/34 (52.94%), Postives = 19/34 (55.88%), Query Frame = 1
Query:  664 LSGKGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            L  KGKMC L INDLE  +   GG    T V NQ
Sbjct:  214 LIAKGKMCALFINDLEPGAGRMGGTTQYT-VNNQ 246          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.472e-53
Identity = 106/183 (57.92%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  141 SRIPPSKVPSASFKITAEVNENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIREGK 680
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA DII++G+
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGR 194          

HSP 2 Score: 25.7942 bits (55), Expect = 1.472e-53
Identity = 14/31 (45.16%), Postives = 17/31 (54.84%), Query Frame = 1
Query:  673 KGKMCCLLINDLECRSWSYGGEPPNTQVKNQ 765
            KG+MC L INDL+  +   G     T V NQ
Sbjct:  192 KGRMCSLFINDLDAGAGRMGDTTQYT-VNNQ 221          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.745e-29
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  411 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIR 671
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE  ++I+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIK 90          

HSP 2 Score: 25.409 bits (54), Expect = 9.745e-29
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  673 KGKMCCLLINDLE 711
            +GKMC L+INDL+
Sbjct:   92 RGKMCVLMINDLD 104          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.269e-28
Identity = 56/87 (64.37%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  411 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAPDIIR 671
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE  ++I+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIK 90          

HSP 2 Score: 25.409 bits (54), Expect = 1.269e-28
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 1
Query:  673 KGKMCCLLINDLE 711
            +GKMC L+INDL+
Sbjct:   92 RGKMCVLMINDLD 104          
BLAST of EY665812 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.773e-27
Identity = 75/133 (56.39%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  234 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 632
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMSAGELESGNAGEPAK+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNAGEPAKM 81          
The following BLAST results are available for this feature:
BLAST of EY665812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ2.643e-8375.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.192e-8073.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU9.991e-8072.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.216e-7971.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.856e-7867.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.472e-5357.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC9.745e-2964.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.269e-2864.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY3.773e-2756.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665812 ID=EY665812; Name=EY665812; organism=Citrus sinensis; type=EST; length=821bp
CCTTTAGCTACTTCAATCACATTCGTCCAATTCTCGCTAGCCTAATGGCT
GCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCC
AAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCC
CCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCAAT
GAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGACGA
ATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTC
TGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCT
TATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGAT
CGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACA
TCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTG
GGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGT
TTTCGCCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGG
AAAGTGGCAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGT
GAGGCACCTGACATTATCAGGGAAGGGAAAAATGTGCTGCCTCTTGATCA
ATGATCTTGAATGCAGAAGCTGGTCCTATGGGGGGGAACCCCCCAATACA
CAGGTAAAAAACCAAAAGGGTTAACCCCAACCTTCCTGAAAAATTGCTGG
ATAACCCAACTTGGGGTCCAA
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