CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THET8 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsE PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = -1 
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN+V VP+    T PH  + +FGA+K++L+PA+PGTGVIAG   R +LE+AGV + L K+LGS N +N A AT+ A+++++   +V R R
Sbjct:   56 QKAGYYARRNMVEVPLQNG-TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR 152
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THET2 (30S ribosomal protein S5 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsE PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = -1 
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN+V VP+    T PH  + +FGA+K++L+PA+PGTGVIAG   R +LE+AGV + L K+LGS N +N A AT+ A+++++   +V R R
Sbjct:   56 QKAGYYARRNMVEVPLQNG-TIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR 152
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRSY (30S ribosomal protein S5 OS=Streptococcus suis (strain 05ZYH33) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG A+V+L+PAS G+GV AGGA R V+E+AG+ +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVESAKKNMIEVPMVG-TTIPHEVRSEFGGARVLLKPASEGSGVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRS2 (30S ribosomal protein S5 OS=Streptococcus suis (strain 98HAH33) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG A+V+L+PAS G+GV AGGA R V+E+AG+ +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVESAKKNMIEVPMVG-TTIPHEVRSEFGGARVLLKPASEGSGVAAGGATRAVIELAGIADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCTU (30S ribosomal protein S5 OS=Mycobacterium tuberculosis GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   93 KGVEEARKSFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 192
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCTA (30S ribosomal protein S5 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   93 KGVEEARKSFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 192
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCMM (30S ribosomal protein S5 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+    VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   92 KGVEEARKGFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKMLQRPEEVAARRGLPI 191
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCBT (30S ribosomal protein S5 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   93 KGVEEARKSFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 192
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCBP (30S ribosomal protein S5 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   93 KGVEEARKSFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 192
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCBO (30S ribosomal protein S5 OS=Mycobacterium bovis GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   93 KGVEEARKSFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPEEVAARRGLPI 192
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_THET89.255e-1847.9630S ribosomal protein S5 OS=Thermus thermophilus (... [more]
RS5_THET29.255e-1847.9630S ribosomal protein S5 OS=Thermus thermophilus (... [more]
RS5_STRSY9.255e-1845.0030S ribosomal protein S5 OS=Streptococcus suis (st... [more]
RS5_STRS29.255e-1845.0030S ribosomal protein S5 OS=Streptococcus suis (st... [more]
RS5_MYCTU9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium tubercul... [more]
RS5_MYCTA9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium tubercul... [more]
RS5_MYCMM9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium marinum ... [more]
RS5_MYCBT9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium bovis (s... [more]
RS5_MYCBP9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium bovis (s... [more]
RS5_MYCBO9.255e-1848.5130S ribosomal protein S5 OS=Mycobacterium bovis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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