CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESHY (30S ribosomal protein S5 OS=Desulfitobacterium hafniense (strain Y51) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V+VP+    T PH   G++GA  V+L+PA+ GTGVIAGGAVR VLE AGV + L K LGS N  N   AT+ A++ +K+  +V++ RG
Sbjct:   61 RKGMEDAKKNMVSVPLIG-TTIPHAILGNYGAGSVLLKPATKGTGVIAGGAVRAVLEAAGVSDILTKSLGSANPHNMVNATMAALKSLKRAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RR5_CYACA (30S ribosomal protein S5, chloroplastic OS=Cyanidium caldarium GN=rps5 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.255e-18
Identity = 41/88 (46.59%), Postives = 63/88 (71.59%), Query Frame = -1 
Query:  234 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKM 497
            +K   D ++ I+  P+T   T  H  +G FGAA V+L+P+  G+GVIAGGA+R V+E++G++N + KQLG+ N LNNA+AT+ A+ K+
Sbjct:   67 KKGVSDCKKQIIEFPLTSSSTISHAVEGRFGAASVILKPSVQGSGVIAGGAMRTVIELSGIKNIVAKQLGTKNHLNNAKATINALSKL 154
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRTD (30S ribosomal protein S5 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNLIEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVVELAGVADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRT2 (30S ribosomal protein S5 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNLIEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVVELAGVADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRT1 (30S ribosomal protein S5 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNLIEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVVELAGVADVTSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRAW (30S ribosomal protein S5 OS=Streptomyces avermitilis GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP  +  T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AGV + L K LGS+NA+N   ATV A++ +++  E++  RG+P+
Sbjct:   85 KGVEEAKKHFFKVPRIQG-TIPHPITGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDILSKSLGSSNAINIVHATVAALKGLQRPEEIAARRGLPL 184
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRA5 (30S ribosomal protein S5 OS=Streptococcus agalactiae serotype V GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N+V VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMVEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRA3 (30S ribosomal protein S5 OS=Streptococcus agalactiae serotype III GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N+V VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMVEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRA1 (30S ribosomal protein S5 OS=Streptococcus agalactiae serotype Ia GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N+V VPM    T PH    +FG AKV+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMVEVPMVG-TTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA +++L+PAS GTGVIAGG  R VLE+AG+ + L K +GSN  +N  RAT   ++++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLMEVPIVG-TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLKRAEDVAKLRG 158
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_DESHY9.255e-1848.4830S ribosomal protein S5 OS=Desulfitobacterium haf... [more]
RR5_CYACA9.255e-1846.5930S ribosomal protein S5, chloroplastic OS=Cyanidi... [more]
RS5_STRTD1.209e-1747.0030S ribosomal protein S5 OS=Streptococcus thermoph... [more]
RS5_STRT21.209e-1747.0030S ribosomal protein S5 OS=Streptococcus thermoph... [more]
RS5_STRT11.209e-1747.0030S ribosomal protein S5 OS=Streptococcus thermoph... [more]
RS5_STRAW1.209e-1746.5330S ribosomal protein S5 OS=Streptomyces avermitil... [more]
RS5_STRA51.209e-1748.0030S ribosomal protein S5 OS=Streptococcus agalacti... [more]
RS5_STRA31.209e-1748.0030S ribosomal protein S5 OS=Streptococcus agalacti... [more]
RS5_STRA11.209e-1748.0030S ribosomal protein S5 OS=Streptococcus agalacti... [more]
RS5_GEOTN1.209e-1744.4430S ribosomal protein S5 OS=Geobacillus thermodeni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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