CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORU7 (30S ribosomal protein S5 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VMLRPA+PGTGVIAGGA R VLE AGV++ L K LGS NA+N   ATV  ++++ +  EV+  RG
Sbjct:   95 QKGAEEARKNFFRVPMING-TITHPVQGEAAAGVVMLRPAAPGTGVIAGGAARPVLECAGVQDILCKSLGSPNAINVVHATVAGLKELVRPEEVAARRG 192          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CORA7 (30S ribosomal protein S5 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H  +G   A  VM++PA+PGTGVIAGGA R VLE AGV++ L K LGS+NALN  RATV  ++++ +  EV+  RG
Sbjct:   91 QKGAEEARKNFFRVPMIAG-TITHPVEGRDAAGIVMMKPAAPGTGVIAGGAARPVLECAGVQDILSKSLGSDNALNVVRATVDGLKQLVRPEEVAARRG 188          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAES (30S ribosomal protein S5 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATINGLQNLKNAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAEQ (30S ribosomal protein S5 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATINGLQNLKNAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROAC (30S ribosomal protein S5 OS=Propionibacterium acnes GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+  +A+++   VP+    T  H   G+  A  VMLRPASPGTGVIAGG+ R VLE AGV + L K LGS+NA+N   ATV A+Q++++  EV+R RG
Sbjct:   85 KAVEEAKKHFFKVPLVGR-TITHPVIGEKAAGVVMLRPASPGTGVIAGGSARAVLECAGVHDVLAKSLGSSNAINVVHATVDALQQLEEPEEVARRRG 181          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROA2 (30S ribosomal protein S5 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N+V VP+ K  T PH+    +G+AKV+++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  ++ M    EV   R
Sbjct:   67 KGVEDGKKNVVKVPIVKG-TIPHQVVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLESMSDAYEVGERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PELPB (30S ribosomal protein S5 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH+    FG+AKVM++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  +Q +    +V   R
Sbjct:   67 KGIEDGKKNVIKVPIVKG-TIPHQIVAKFGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLQSISDAYDVGERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCUA (30S ribosomal protein S5 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +AR+    VP+    T  H   G+  A  V+LRPASPGTGV+AGGA R VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+P+
Sbjct:   92 KGVEEARKGFFRVPLIGG-TITHPVQGEAAAGVVLLRPASPGTGVLAGGAARAVLECAGVHDILAKSLGSDNAINVVHATVAALKMLQRPEEVAARRGLPI 191          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCMS (30S ribosomal protein S5 OS=Mycoplasma mycoides subsp. mycoides SC GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 55/184 (29.89%), Postives = 89/184 (48.37%), Query Frame = -1
Query:  204 SVSGNDVYVMDSKAKKTSAFGK-----TKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 740
            S   ++V    ++ K+T  F +     +K ++VKD FEE                  +F A+                       ++K+  +A++N+V+V + +  T PH   G FGA K++++PA  GTG+IAGG  R V+E+AG+ +   K LGSNNA+N  RAT   +  M+  + V   R
Sbjct:   12 SEMNSNVEKASTQVKETKKFERRTRPQSKSKQVKDEFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLVSVTL-RNTTVPHEVLGTFGAGKILIKPAKVGTGIIAGGPARAVIELAGISDVYAKSLGSNNAINMIRATFEGLSSMQTLKRVQELR 194          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACLA (30S ribosomal protein S5 OS=Lactococcus lactis subsp. lactis GN=rpsE PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.579e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A++N++TVPM    T PH + G FG  K++L+PA  G GV AGGAVR VLE+AGV +   K LGSN  +N  RATV  + ++K+  EV+  RG
Sbjct:   64 RKAIEAAKKNLITVPMVG-TTLPHEALGVFGGGKILLKPAVEGAGVAAGGAVRAVLELAGVADVTSKSLGSNTPINVVRATVDGLNQLKRAEEVAALRG 161          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CORU71.209e-1751.5230S ribosomal protein S5 OS=Corynebacterium urealy... [more]
RS5_CORA71.209e-1751.5230S ribosomal protein S5 OS=Corynebacterium aurimu... [more]
RS5_STAES1.579e-1746.4630S ribosomal protein S5 OS=Staphylococcus epiderm... [more]
RS5_STAEQ1.579e-1746.4630S ribosomal protein S5 OS=Staphylococcus epiderm... [more]
RS5_PROAC1.579e-1750.0030S ribosomal protein S5 OS=Propionibacterium acne... [more]
RS5_PROA21.579e-1746.3930S ribosomal protein S5 OS=Prosthecochloris aestu... [more]
RS5_PELPB1.579e-1746.3930S ribosomal protein S5 OS=Pelodictyon phaeoclath... [more]
RS5_MYCUA1.579e-1747.5230S ribosomal protein S5 OS=Mycobacterium ulcerans... [more]
RS5_MYCMS1.579e-1729.8930S ribosomal protein S5 OS=Mycoplasma mycoides su... [more]
RS5_LACLA1.579e-1747.4730S ribosomal protein S5 OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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