CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIC1 (30S ribosomal protein S5 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.062e-17
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++  TVP  +  T PH   G+  A  V+LRPASPGTGVIAGG VR VLE AGV + L K LGS+NA+N   ATV A++ +    +V+  RG+P+
Sbjct:   83 KGVEEAKKHFFTVPRVQG-TIPHPVIGEAAAGVVLLRPASPGTGVIAGGPVRAVLECAGVRDVLSKSLGSDNAVNIVHATVKALRALVPPEKVAVRRGLPL 182
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAHJ (30S ribosomal protein S5 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATINGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAW (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MW2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAT (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAS (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MSSA476) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAR (30S ribosomal protein S5 OS=Staphylococcus aureus (strain MRSA252) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAN (30S ribosomal protein S5 OS=Staphylococcus aureus (strain N315) GN=rpsE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAM (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAE (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Newman) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAC (30S ribosomal protein S5 OS=Staphylococcus aureus (strain COL) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_ACIC12.062e-1748.5130S ribosomal protein S5 OS=Acidothermus celluloly... [more]
RS5_STAHJ2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus haemoly... [more]
RS5_STAAW2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAT2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAS2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAR2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAN2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAM2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAE2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAAC2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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