CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAAB (30S ribosomal protein S5 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAA9 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAA8 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAA3 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain USA300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAA2 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain JH1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAA1 (30S ribosomal protein S5 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = -1 
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G +G+  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  +Q +K   +V++ RG
Sbjct:   61 KKAVEAAKKDLVVVPRVEGTT-PHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATIDGLQNLKNAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NATTJ (30S ribosomal protein S5 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K   DA++N++ VPM    T PH   G  G  +V+L+PA  GTGVIAGG VR VLE AG+ + L K LGSNNA +   AT+  + ++K   +V+R RGI
Sbjct:   63 RKGIEDAKKNLIKVPMVG-TTIPHEIVGRDGGGQVLLKPAYEGTGVIAGGPVRAVLEQAGIRDILTKSLGSNNAKSMVNATIAGLNQLKTAEQVARLRGI 161
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LISW6 (30S ribosomal protein S5 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VP T   T PH   G FG  +++L+PAS G+GV AGG VR VLE+AGV +   K LGSN  +N  RAT+  ++++K   +V++ RG
Sbjct:   62 RKAVEDAKKNMVLVP-TVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LISMO (30S ribosomal protein S5 OS=Listeria monocytogenes GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VP T   T PH   G FG  +++L+PAS G+GV AGG VR VLE+AGV +   K LGSN  +N  RAT+  ++++K   +V++ RG
Sbjct:   62 RKAVEDAKKNMVLVP-TVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LISMF (30S ribosomal protein S5 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VP T   T PH   G FG  +++L+PAS G+GV AGG VR VLE+AGV +   K LGSN  +N  RAT+  ++++K   +V++ RG
Sbjct:   62 RKAVEDAKKNMVLVP-TVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRG 159
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_STAAB2.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA92.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA82.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA32.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA22.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_STAA12.693e-1746.4630S ribosomal protein S5 OS=Staphylococcus aureus ... [more]
RS5_NATTJ2.693e-1747.0030S ribosomal protein S5 OS=Natranaerobius thermop... [more]
RS5_LISW62.693e-1745.4530S ribosomal protein S5 OS=Listeria welshimeri se... [more]
RS5_LISMO2.693e-1745.4530S ribosomal protein S5 OS=Listeria monocytogenes... [more]
RS5_LISMF2.693e-1745.4530S ribosomal protein S5 OS=Listeria monocytogenes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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