CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_COREF (30S ribosomal protein S5 OS=Corynebacterium efficiens GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK A +AR+N   VPM    T  H   G+  A  VML+PA+PGTGVIAGGA R VLE AG+++ L K LGS+NA+N   ATV  ++++ +  EV+  RG
Sbjct:   94 QKGAEEARKNFFRVPMVGG-TITHPVQGEAAAGIVMLKPAAPGTGVIAGGAARPVLECAGIQDILSKSLGSDNAINVVHATVDGLKQLVRPEEVAARRG 191
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ARTAT (30S ribosomal protein S5 OS=Arthrobacter aurescens (strain TC1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     T PHR  G+  A  V+LRPAS GTGVIAGG VR VLE  G+ + L K LGS+NA+N   ATV A++++++   V+  RG+P+
Sbjct:  105 KGVEEAKKSFFRVPRVGS-TIPHRVQGEAAAGVVLLRPASAGTGVIAGGPVRAVLECVGIHDILSKSLGSSNAINIVHATVAALKQLEEPASVAARRGLPL 204
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEFY (30S ribosomal protein S5 OS=Thermobifida fusca (strain YX) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A++N   VP     T  H+  G+  A  V+LRPA+PGTGVIAGG VR VLE AG+ + L K LGS+N +N  RATV A++ + +  E++  RG+P+
Sbjct:   82 KGVEEAKKNFFRVPRIGG-TIVHQVQGEDAAGVVLLRPAAPGTGVIAGGPVRAVLECAGIHDVLTKSLGSSNPINIVRATVAALKSLSRPEEIAARRGLPL 181
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPM (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M28 GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPG (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPF (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPD (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPC (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRPB (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRP8 (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M18 GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_COREF2.693e-1749.4930S ribosomal protein S5 OS=Corynebacterium effici... [more]
RS5_ARTAT2.693e-1745.5430S ribosomal protein S5 OS=Arthrobacter aurescens... [more]
RS5_THEFY3.517e-1745.5430S ribosomal protein S5 OS=Thermobifida fusca (st... [more]
RS5_STRPM3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRPG3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRPF3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRPD3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRPC3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRPB3.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRP83.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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