CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRP6 (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M6 GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRP3 (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M3 GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRP1 (30S ribosomal protein S5 OS=Streptococcus pyogenes serotype M1 GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG AKV+L+PA  G+GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RGI
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVYTNFGGAKVLLKPAVEGSGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGI 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCLE (30S ribosomal protein S5 OS=Mycobacterium leprae GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGAVR VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+
Sbjct:   89 KGVEEARKSFFRVPLIDG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAVRAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPDEVAARRGL 186          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCLB (30S ribosomal protein S5 OS=Mycobacterium leprae (strain Br4923) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K   +AR++   VP+    T  H   G+  A  V+LRPASPGTGVIAGGAVR VLE AGV + L K LGS+NA+N   ATV A++ +++  EV+  RG+
Sbjct:   89 KGVEEARKSFFRVPLIDG-TITHPVQGEAAAGVVLLRPASPGTGVIAGGAVRAVLECAGVHDILAKSLGSDNAINVVHATVAALKLLQRPDEVAARRGL 186          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LISIN (30S ribosomal protein S5 OS=Listeria innocua GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VP T   T PH   G FG  +++L+PAS G+GV AGG VR VLE+AGV +   K LGSN  +N  RAT+  ++++K   +V++ RG
Sbjct:   62 RKAVEDAKKNMVFVP-TVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLPB (30S ribosomal protein S5 OS=Chlorobium phaeobacteroides (strain BS1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH+    +G+AKVM++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  ++ +    +V+  R
Sbjct:   67 KGVEDGKKNVIKVPIVKG-TIPHQIIARYGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILAKSLGSSNPHNVVKAAISGLESISDAYDVAERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLAD (30S ribosomal protein S5 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K A  A+RN++ VP+  + T PH     F A KVMLRPA+PGTGVIAG  VR V+E AG+++ L K  GSNN +N  +AT  A+ +M   +E++R R
Sbjct:   63 RKGAEAAKRNLIRVPLV-HSTIPHEIVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLQEMARRR 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ARTS2 (30S ribosomal protein S5 OS=Arthrobacter sp. (strain FB24) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.517e-17
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     T PHR  G+  A  VMLRPAS GTGVIAGG VR VLE  G+ + L K LGS+NA+N   ATV A++++++   V+  RG+P+
Sbjct:  118 KGVEEAKKSFFRVPRIGS-TIPHRVQGEAAAGVVMLRPASAGTGVIAGGPVRAVLECVGIHDILSKSLGSSNAINIVHATVDALKRLEEPAAVAARRGLPL 217          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THESQ (30S ribosomal protein S5 OS=Thermotoga sp. (strain RQ2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+RNI+ VP+    T PH   G   A+KV+LRPA+PGTG+IAGG VR V+E+AG++N L K LGS N LN A AT+  ++ +   R+V++ R I
Sbjct:   65 RKAISAAKRNIIEVPVING-TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPLNLALATMNGLKNLLDPRKVAKLRDI 163          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_STRP63.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRP33.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_STRP13.517e-1747.0030S ribosomal protein S5 OS=Streptococcus pyogenes... [more]
RS5_MYCLE3.517e-1749.4930S ribosomal protein S5 OS=Mycobacterium leprae G... [more]
RS5_MYCLB3.517e-1749.4930S ribosomal protein S5 OS=Mycobacterium leprae (... [more]
RS5_LISIN3.517e-1745.4530S ribosomal protein S5 OS=Listeria innocua GN=rp... [more]
RS5_CHLPB3.517e-1744.3330S ribosomal protein S5 OS=Chlorobium phaeobacter... [more]
RS5_CHLAD3.517e-1747.9630S ribosomal protein S5 OS=Chloroflexus aggregans... [more]
RS5_ARTS23.517e-1746.5330S ribosomal protein S5 OS=Arthrobacter sp. (stra... [more]
RS5_THESQ4.593e-1748.0030S ribosomal protein S5 OS=Thermotoga sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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