CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEP1 (30S ribosomal protein S5 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+RNI+ VP+    T PH   G   A+KV+LRPA+PGTG+IAGG VR V+E+AG++N L K LGS N LN A AT+  ++ +   R+V++ R I
Sbjct:   65 RKAISAAKRNIIEVPVING-TIPHEIIGRQDASKVLLRPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPLNLALATMNGLKNLLDPRKVAKLRDI 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PROVI (30S ribosomal protein S5 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N+V VP+ K  T PH+    +G+AKV+++PA+PGTG+IAGGAVR VLEMAGV + L K LGS+N  N  +A +  ++ +    +V+  R
Sbjct:   67 KGVEDGKKNVVKVPIIKG-TIPHQIIAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGVRDVLTKSLGSSNPHNVVKAAIKGLKSISDANDVAERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_OCEIH (30S ribosomal protein S5 OS=Oceanobacillus iheyensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+++VP+    T PH   G FG+  V+++PA+ GTGVI+GG VR +LE+AGV + L K LGSN  +N  RAT+  +  +K   +V++ RG
Sbjct:   62 KKAVDDAKKNLISVPIVG-TTIPHEIHGQFGSGNVLMKPAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPINMIRATLNGLTNLKTAEDVAKLRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACBA (30S ribosomal protein S5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+   AR+N++ VP+    T PH   G FG  K+ML+PA+ G+GV AGGAVR V+E+AGV +   K+LGSN  +N  RAT   + ++K+  EV+  RG+ +
Sbjct:   62 RKAVEAARKNLIEVPIVG-TTIPHEVLGTFGGGKIMLKPAAEGSGVTAGGAVRSVMELAGVADVTSKRLGSNTPVNAVRATFDGLTQLKRAEEVAALRGVSL 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOLS (30S ribosomal protein S5 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    A++N++ VP+ +  + P+   G FGA +++++PASPGTGVIAGGA R + E AG+ N L K LGSNN  N  +A    ++ +K   E++  RG+
Sbjct:   61 RKGVEQAKKNLIKVPVNQNQSIPYEIIGRFGAGRILMKPASPGTGVIAGGAARAIFEAAGISNILSKCLGSNNPHNVVKAAFEGLRLLKTPEELTARRGL 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACV8 (30S ribosomal protein S5 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K    A++N+  VP+ K  T PH     FG A+V ++PAS GTGV+AGGA+R VLE  GV + L K  GS+N  N  +AT++A+ +M+  R V++ RG+ M
Sbjct:   66 KGVEAAKKNLTRVPVLKG-TVPHEQSAKFGGAEVFIKPASTGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATILALGEMRDARMVAQNRGVSM 165          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRMU (30S ribosomal protein S5 OS=Streptococcus mutans GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 45/100 (45.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++N++ VPM    T PH    +FG A+V+L+PA  G GV AGGAVR V+E+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RG+
Sbjct:   60 RKAVEAAKKNMIEVPMVG-TTIPHEVRSEFGGARVLLKPAVEGAGVAAGGAVRAVVELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVASLRGV 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRCO (30S ribosomal protein S5 OS=Streptomyces coelicolor GN=rpsE PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP  +  T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AG+ + L K LGS+N +N   ATV A++ +++  E++  RG+P+
Sbjct:   85 KGVEEAKKHFFKVPRIQG-TIPHPIQGEKAAGVVLLKPASPGTGVIAGGPVRAVLECAGIHDVLSKSLGSDNQINIVHATVEALKGLQRPEEIAARRGLPL 184          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACPL (30S ribosomal protein S5 OS=Lactobacillus plantarum GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 43/100 (43.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K++  A++N++TVPM    T PH + G +G  ++ML+PA  G+GV AGGAVR V+E+AGV++   K+LGSN  +N  RAT   ++ +K   +V+  RG+
Sbjct:   61 RKASEAAKKNLITVPMVG-TTIPHEALGVYGGGRIMLKPAVEGSGVAAGGAVRAVMELAGVDDVTSKRLGSNTPVNVVRATFEGLKSLKTAEQVAALRGV 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLTE (30S ribosomal protein S5 OS=Chlorobium tepidum GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH     +G+AKV+++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  +Q +    +V+  R
Sbjct:   67 KGVEDGKKNVIKVPIVKG-TIPHPIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLQNISDANDVAERR 162          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_THEP14.593e-1748.0030S ribosomal protein S5 OS=Thermotoga petrophila ... [more]
RS5_PROVI4.593e-1745.3630S ribosomal protein S5 OS=Prosthecochloris vibri... [more]
RS5_OCEIH4.593e-1743.4330S ribosomal protein S5 OS=Oceanobacillus iheyens... [more]
RS5_LACBA4.593e-1744.1230S ribosomal protein S5 OS=Lactobacillus brevis (... [more]
RS5_GEOLS4.593e-1741.0030S ribosomal protein S5 OS=Geobacter lovleyi (str... [more]
RS5_BACV84.593e-1744.5530S ribosomal protein S5 OS=Bacteroides vulgatus (... [more]
RS5_STRMU5.999e-1745.0030S ribosomal protein S5 OS=Streptococcus mutans G... [more]
RS5_STRCO5.999e-1744.5530S ribosomal protein S5 OS=Streptomyces coelicolo... [more]
RS5_LACPL5.999e-1743.0030S ribosomal protein S5 OS=Lactobacillus plantaru... [more]
RS5_CHLTE5.999e-1744.3330S ribosomal protein S5 OS=Chlorobium tepidum GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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