CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLP8 (30S ribosomal protein S5 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH     +G+AKV+++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  +Q +    +V+  R
Sbjct:   67 KGVEDGKKNVIKVPIVKG-TIPHPIVAKYGSAKVLMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLQSISDANDVAERR 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACTN (30S ribosomal protein S5 OS=Bacteroides thetaiotaomicron GN=rpsE PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.999e-17
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    A++N+V VP+ K  T PH     FG A+V ++PAS GTGV+AGGA+R VLE  G+ + L K  GS+N  N  +AT+ A+ +M+  R +++ RGI
Sbjct:   67 KGVESAKKNLVKVPVLKG-TVPHEQSAKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGITDVLAKSKGSSNPHNLVKATIEALSEMRDARMIAQNRGI 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEMA (30S ribosomal protein S5 OS=Thermotoga maritima GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 48/100 (48.00%), Postives = 68/100 (68.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+RNIV VP+    T PH   G   A+KV+L+PA+PGTG+IAGG VR V+E+AG++N L K LGS N LN A AT+  ++ +   R+V++ R I
Sbjct:   65 RKAISAAKRNIVEVPVING-TIPHEVIGRQDASKVLLKPAAPGTGIIAGGTVRAVVELAGIQNILTKSLGSTNPLNLALATMNGLKNLLDPRKVAKLRDI 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NOCSJ (30S ribosomal protein S5 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP  +  T PH   G+  A  V+LRPA+PGTGVIAGG VR VLE AG+ + L K LGS+N +N   ATV A++ ++Q   V+  RG+P+
Sbjct:   81 KGVEEAKKHFFRVPRIQG-TIPHPVQGEKAAGVVLLRPAAPGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNQINIVHATVEALRMLEQPEAVAARRGLPV 180          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYXXD (30S ribosomal protein S5 OS=Myxococcus xanthus (strain DK 1622) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   +A++N+  VP+  + T PH   G FGA  V+L+PA+ GTGVIAGGAVR VLE AG+ N L K  GS N  N  +ATV  ++ ++   +VSR RG
Sbjct:   62 RKGGENAKKNLFRVPLVGH-TIPHEVLGHFGAGWVLLKPATQGTGVIAGGAVRAVLEAAGIRNILTKSQGSRNPHNVLKATVAGLKLLRSAEQVSRLRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRASN (30S ribosomal protein S5 OS=Frankia sp. (strain EAN1pec) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AGV + L K LGS+N +N   ATV A++ + +  E++  RG+P+
Sbjct:   85 KGVEEAKKHFFKVPRIGS-TIPHPVQGEEAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDVLSKSLGSSNPINIVHATVAALRGLMRPEEIAARRGLPL 184          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRASC (30S ribosomal protein S5 OS=Frankia sp. (strain CcI3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AGV + L K LGS+N +N   ATV A++ + +  E++  RG+P+
Sbjct:   85 KGVEEAKKHFFKVPRIGS-TIPHPVQGEEAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDVLSKSLGSSNPINIVHATVAALRGLMRPEEIAARRGLPL 184          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRAAA (30S ribosomal protein S5 OS=Frankia alni (strain ACN14a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     T PH   G+  A  V+L+PASPGTGVIAGG VR VLE AGV + L K LGS+N +N   ATV A++ + +  E++  RG+P+
Sbjct:   85 KGVEEAKKHFFKVPRIGS-TIPHPVQGEEAAGVVLLKPASPGTGVIAGGPVRAVLECAGVHDVLSKSLGSSNPINIVHATVAALRGLMRPEEIAARRGLPL 184          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BIFAA (30S ribosomal protein S5 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K  +DA++++ TVP  K  T  H   G   A  V+LRPA+PGTGVIAGGAVR V+E AG+ + L K +GS  A+N  RATV A++K+++  E++  RG+ +
Sbjct:  106 KGQLDAKKHMFTVPRIKG-TVTHPVIGHDAAGTVLLRPAAPGTGVIAGGAVRAVMECAGITDVLTKSMGSATAVNVVRATVDALKKLEEPEEIAARRGMSL 205          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_TROWT (30S ribosomal protein S5 OS=Tropheryma whipplei (strain Twist) GN=rpsE PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    AR+N  TVP     T PH   G+  +  V+LRPA+PGTGVIAGG VR VLE AGV + L K LGS+N++N   AT+ A++ ++    V+R RG+
Sbjct:  104 KGIESARKNFFTVPRVAS-TIPHPVQGEAASGVVLLRPAAPGTGVIAGGPVRAVLECAGVRDVLSKSLGSSNSINVVYATLDALKHLEDPASVARRRGL 201          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CHLP85.999e-1744.3330S ribosomal protein S5 OS=Chlorobaculum parvum (... [more]
RS5_BACTN5.999e-1744.4430S ribosomal protein S5 OS=Bacteroides thetaiotao... [more]
RS5_THEMA7.835e-1748.0030S ribosomal protein S5 OS=Thermotoga maritima GN... [more]
RS5_NOCSJ7.835e-1745.5430S ribosomal protein S5 OS=Nocardioides sp. (stra... [more]
RS5_MYXXD7.835e-1747.4730S ribosomal protein S5 OS=Myxococcus xanthus (st... [more]
RS5_FRASN7.835e-1745.5430S ribosomal protein S5 OS=Frankia sp. (strain EA... [more]
RS5_FRASC7.835e-1745.5430S ribosomal protein S5 OS=Frankia sp. (strain Cc... [more]
RS5_FRAAA7.835e-1745.5430S ribosomal protein S5 OS=Frankia alni (strain A... [more]
RS5_BIFAA7.835e-1746.5330S ribosomal protein S5 OS=Bifidobacterium adoles... [more]
RS5_TROWT1.023e-1647.4730S ribosomal protein S5 OS=Tropheryma whipplei (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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