CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_TROW8 (30S ribosomal protein S5 OS=Tropheryma whipplei (strain TW08/27) GN=rpsE PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    AR+N  TVP     T PH   G+  +  V+LRPA+PGTGVIAGG VR VLE AGV + L K LGS+N++N   AT+ A++ ++    V+R RG+
Sbjct:  104 KGIESARKNFFTVPRVAS-TIPHPVQGEAASGVVLLRPAAPGTGVIAGGPVRAVLECAGVRDVLSKSLGSSNSINVVYATLDALKHLEDPASVARRRGL 201          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PHEZH (30S ribosomal protein S5 OS=Phenylobacterium zucineum (strain HLK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  +A+++++ VP+ +  T  H   G +GA KVM+R A PGTGVIAGG +R VLE  GV++ +GK +GS+N  N  RAT  A++     R+V+ +RG
Sbjct:   72 RKATEEAKKSMIRVPLRESRTLHHDGAGRWGAGKVMVRAAPPGTGVIAGGPMRAVLETLGVQDVVGKSVGSSNPYNMVRATFEALKAQSSPRQVAAKRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEIXX (30S ribosomal protein S5 OS=Leifsonia xyli subsp. xyli GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K   +A++N   VP     T PH   G+  A  V+LRPA+ GTGVIAGG VR VLE AG+ + L K LGS+N +N   ATV A+Q++++ R V+  RG+
Sbjct:  101 KGVEEAKKNFFRVPRVAN-TIPHPVQGEAAAGVVLLRPAAAGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNTINIVHATVEALQQLEEPRAVAARRGL 198          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACFR (30S ribosomal protein S5 OS=Bacteroides fragilis GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    A++N+  VP+ K  T PH     FG A+V ++PAS GTGV+AGGA+R VLE  GV + L K  GS+N  N  +AT++A+ +M+  R +++ RGI
Sbjct:   67 KGVESAKKNLTRVPVLKG-TVPHEQSAKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATIMALGEMRDARMIAQNRGI 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACFN (30S ribosomal protein S5 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    A++N+  VP+ K  T PH     FG A+V ++PAS GTGV+AGGA+R VLE  GV + L K  GS+N  N  +AT++A+ +M+  R +++ RGI
Sbjct:   67 KGVESAKKNLTRVPVLKG-TVPHEQSAKFGGAEVFIKPASHGTGVVAGGAMRAVLESVGVTDVLAKSKGSSNPHNLVKATIMALGEMRDARMIAQNRGI 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THIDA (30S ribosomal protein S5 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V + + K  TF H   G  GA++V+++PAS GTG+IAGGA+R V E+ GV+N L K LGS N  N  RAT+  + KM    E++ +RG
Sbjct:   66 QKAMEEARRKLVKISL-KNGTFHHTVVGQHGASRVLIQPASEGTGIIAGGAMRAVFEVMGVQNVLAKCLGSTNPYNVVRATIDGLMKMSTPSEIAAKRG 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PELCD (30S ribosomal protein S5 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++N++ VP+ K  + P    G FGA +V+L+PAS GTGVIAGGAVR VLE++GV + L K +GSNN  N  RAT+ A+ ++K   E+   RG
Sbjct:   61 RKGVEQAKKNLIRVPL-KDRSIPFDVIGKFGAGRVLLKPASAGTGVIAGGAVRAVLEVSGVGDILSKCIGSNNPHNVVRATIDALSRLKSAEELRALRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FERNB (30S ribosomal protein S5 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+ V ARRNI+ +P+ K  T PH   G   AAK++++PA+PGTG+IA G VR +LE+AGV+N L K +GS N +  A+ATV  V+ +    +++  R I
Sbjct:   65 RKALVSARRNIIEIPVVKG-TIPHEVVGRQDAAKILMKPAAPGTGIIANGTVRAILELAGVQNVLTKAMGSTNPVIMAQATVNGVKNLYSIDKIAALRDI 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N+V VPM    T PH   G FG  +++++PA  G+GV AGG VR VLE+AGV +   K LGSN  +N  RATV  ++++K+  EV+  RG
Sbjct:   61 RKAIEDAKKNLVEVPMVGS-TIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAALRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLCH (30S ribosomal protein S5 OS=Chlorobium chlorochromatii (strain CaD3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  204 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 494
            K   D ++N++ VP+ K  T PH+    +G+AKVM++PA+PGTG+IAGGAVR VLEMAG+ + L K LGS+N  N  +A +  +Q +    +V   R
Sbjct:   67 KGIEDGKKNVIKVPIVKG-TIPHQIVVKYGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNPHNVVKAAIKGLQYISDAYDVGERR 162          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_TROW81.023e-1647.4730S ribosomal protein S5 OS=Tropheryma whipplei (s... [more]
RS5_PHEZH1.023e-1643.4330S ribosomal protein S5 OS=Phenylobacterium zucin... [more]
RS5_LEIXX1.023e-1646.4630S ribosomal protein S5 OS=Leifsonia xyli subsp. ... [more]
RS5_BACFR1.023e-1644.4430S ribosomal protein S5 OS=Bacteroides fragilis G... [more]
RS5_BACFN1.023e-1644.4430S ribosomal protein S5 OS=Bacteroides fragilis (... [more]
RS5_THIDA1.336e-1646.4630S ribosomal protein S5 OS=Thiobacillus denitrifi... [more]
RS5_PELCD1.336e-1647.4730S ribosomal protein S5 OS=Pelobacter carbinolicu... [more]
RS5_FERNB1.336e-1645.0030S ribosomal protein S5 OS=Fervidobacterium nodos... [more]
RS5_ENTFA1.336e-1645.4530S ribosomal protein S5 OS=Enterococcus faecalis ... [more]
RS5_CHLCH1.336e-1645.3630S ribosomal protein S5 OS=Chlorobium chlorochrom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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