CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIF5 (30S ribosomal protein S5 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR + ++P+ +  T P+  +G  GAA+VMLRPA  G+GVIAGGA+R V E  G+ N + K LGSNN +N  RAT  A  K+   + ++ +RG
Sbjct:   64 QKATDQARRWMTSIPLMRGGTIPYPVEGRHGAARVMLRPAPEGSGVIAGGAMRAVCEAVGLRNVVAKSLGSNNPINVVRATFDAFDKLISPQAIAMKRG 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIF2 (30S ribosomal protein S5 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.336e-16
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR + ++P+ +  T P+  +G  GAA+VMLRPA  G+GVIAGGA+R V E  G+ N + K LGSNN +N  RAT  A  K+   + ++ +RG
Sbjct:   64 QKATDQARRWMTSIPLMRGGTIPYPVEGRHGAARVMLRPAPEGSGVIAGGAMRAVCEAVGLRNVVAKSLGSNNPINVVRATFDAFDKLISPQAIAMKRG 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_TREPS (30S ribosomal protein S5 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   A+R++V  P+ K  T PH     F  + V+LRPA  GTG+IAGG VR ++E+AG  + L K LGSN+A+N  RAT  AV ++   R+++RERG
Sbjct:   67 RKSVERAKRSMVLFPL-KDGTIPHEVQAKFKGSLVLLRPACSGTGIIAGGTVRAIMEVAGATDVLSKSLGSNSAINVVRATFGAVAQLMDARKLARERG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_TREPA (30S ribosomal protein S5 OS=Treponema pallidum GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 46/99 (46.46%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   A+R++V  P+ K  T PH     F  + V+LRPA  GTG+IAGG VR ++E+AG  + L K LGSN+A+N  RAT  AV ++   R+++RERG
Sbjct:   67 RKSVERAKRSMVLFPL-KDGTIPHEVQAKFKGSLVLLRPACSGTGIIAGGTVRAIMEVAGATDVLSKSLGSNSAINVVRATFGAVAQLMDARKLARERG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STAS1 (30S ribosomal protein S5 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K AV+A ++++V VP  +  T PH   G F +  V ++PA+PGTGVIAGG VR VLE+AG+ + L K LGSN  +N  RAT+  ++ +K   +V++ RG
Sbjct:   60 KKAVEAAKKDLVVVPRVEGTT-PHTITGRFSSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATINGLKNLKNAEDVAKLRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SACEN (30S ribosomal protein S5 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A++N   VP     T  H   G+  A  V+LRPAS GTGVIAGG VR VLE AGV + L K LGS+N +N   ATV A++++++  EV+  RG+P+
Sbjct:   87 KGVEEAKKNFFRVPRLGG-TITHPVQGEDAAGVVLLRPASAGTGVIAGGPVRAVLECAGVHDVLSKSLGSDNPINIVHATVAALKQLQRPEEVAARRGLPL 186          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ROSS1 (30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    A++N++ VP++   T PH    +F A+KV L PA+PGTGVIAG  VR VLEMAG+++ L K+ GSNN +N  +AT  A+  +    E +R RG+
Sbjct:   63 RKGVEAAKKNLIRVPLSG-TTIPHEVQMEFAASKVRLLPAAPGTGVIAGRGVRPVLEMAGIKDVLSKRYGSNNPINVVKATFKALSALTSLEEQARMRGM 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA++N++ VP     T PH   G FGA +V+L+PA  G+G+ AGGAVR V+E+AG+++   K LGS  A+N  RAT+  + +MK   +++  R I
Sbjct:   61 RKAVEDAKKNLINVPKVG-TTLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGSKTAINVIRATIDGLTRMKTAEQIAELRNI 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BLOFL (30S ribosomal protein S5 OS=Blochmannia floridanus GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.745e-16
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR N++ +P+    T  H   G +  A++ ++PAS GTG+IAGGA+R +LE+ G+ N L K  GS N +N  RATV A++ MK    V+ +RG
Sbjct:   64 QKAMEKARHNMIDIPLNPGRTLQHSIIGIYTGARIYMKPASEGTGIIAGGAMRAILEVVGIHNVLAKAYGSTNPINIVRATVNALKNMKSPEMVAEKRG 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEPCP (30S ribosomal protein S5 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARR +V +P+    T PH + G+ GAAKV+L PA  GTG+IAGG +R V E+ G+ + + K LGS+N  N  RAT  A+ +M    +V+ +RG+
Sbjct:   67 QKAMESARRGLVKIPLRNG-TVPHNATGEHGAAKVLLAPAPAGTGIIAGGPMRAVFEVLGITDIVAKSLGSSNPYNMVRATFDALSRMTTASQVAAKRGL 165          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_ACIF51.336e-1645.4530S ribosomal protein S5 OS=Acidithiobacillus ferr... [more]
RS5_ACIF21.336e-1645.4530S ribosomal protein S5 OS=Acidithiobacillus ferr... [more]
RS5_TREPS1.745e-1646.4630S ribosomal protein S5 OS=Treponema pallidum sub... [more]
RS5_TREPA1.745e-1646.4630S ribosomal protein S5 OS=Treponema pallidum GN=... [more]
RS5_STAS11.745e-1645.4530S ribosomal protein S5 OS=Staphylococcus saproph... [more]
RS5_SACEN1.745e-1646.5330S ribosomal protein S5 OS=Saccharopolyspora eryt... [more]
RS5_ROSS11.745e-1645.0030S ribosomal protein S5 OS=Roseiflexus sp. (strai... [more]
RS5_LACSS1.745e-1642.0030S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_BLOFL1.745e-1642.4230S ribosomal protein S5 OS=Blochmannia floridanus... [more]
RS5_LEPCP2.280e-1644.0030S ribosomal protein S5 OS=Leptothrix cholodnii (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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