CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACRD (30S ribosomal protein S5 OS=Lactobacillus reuteri (strain DSM 20016) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A +N++TVP+    T PH   G +G  K+ML+PA  G+GV AGGAVR V+++AGV +   K+LGSN  +N  RAT   ++++K   EV++ RG+
Sbjct:   64 RKAQAAAEKNLITVPIVG-TTIPHEVIGVYGGGKIMLKPAVEGSGVAAGGAVRNVMDLAGVADVTSKRLGSNTPVNVVRATFEGLKQLKNAEEVAKLRGV 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOSL (30S ribosomal protein S5 OS=Geobacter sulfurreducens GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    A++N++ VP+ +  T P+   G FGA +V+++PAS GTGVIAGGA R V E AG+ N L K LGSNN  N  +A    + +++   E+   RG+
Sbjct:   61 RKGVEQAKKNLIKVPIVEGHTIPYEVLGHFGAGRVLIKPASAGTGVIAGGAARAVFEAAGLHNVLSKCLGSNNPHNVVKAAFNGLAQLRSPEEIMARRGV 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLSY (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K A  A+RN++ VP+  + T PH     F A KVMLRPA+PGTGVIAG  VR V+E AG+++ L K  GSNN +N  +AT  A+ +M    E++  R
Sbjct:   63 RKGAEAAKRNLIRVPLV-HATVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLHEMASRR 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLAA (30S ribosomal protein S5 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K A  A+RN++ VP+  + T PH     F A KVMLRPA+PGTGVIAG  VR V+E AG+++ L K  GSNN +N  +AT  A+ +M    E++  R
Sbjct:   63 RKGAEAAKRNLIRVPLV-HATVPHEVVTKFAATKVMLRPAAPGTGVIAGRGVRPVVEAAGIKDLLSKVYGSNNPVNVVKATFKALSEMTSLHEMASRR 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ALKOO (30S ribosomal protein S5 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.280e-16
Identity = 43/99 (43.43%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N++ VP+    T PH + G FGA  V++ PA  GTG+IAGG VR VLE+AG ++   K LG+NNA N   A +  + ++K+  EV++ RG
Sbjct:   63 RKGIEDAKKNLIHVPIVG-TTVPHETIGIFGAGNVLIMPAKEGTGIIAGGPVRTVLELAGFKDVRAKSLGTNNAKNMVNAAINGLSQLKRAEEVAKLRG 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHEAM (30S ribosomal protein S5 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 48/100 (48.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +V+ +RG+
Sbjct:   63 QKAMEKARRNMVTVELNEG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALTHMKSPAQVAAKRGL 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MESFL (30S ribosomal protein S5 OS=Mesoplasma florum GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = -1
Query:  213 KEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVS 668
            K+  KD FEE                  +F A+                       ++K+  +A++N++ VP+ +  T PH   G FGA +V+++PA PGTGVIAGG  R V+E+AG+ +   K LG NN +N  RAT+  +  M   ++V+
Sbjct:   36 KQFQKDDFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGDKKGQVGLGTGKANEVPEAIKKAVKEAKKNLIRVPL-RGTTVPHEVIGHFGAGQVLIKPAKPGTGVIAGGPARAVIELAGIADVYAKSLGRNNPINMIRATIDGLSSMHTAKKVN 186          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_IDILO (30S ribosomal protein S5 OS=Idiomarina loihiensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV + K  T  H   G    ++V ++PAS GTG+IAGGA+R VLE++GV N L K  GS N +N  RAT+ A+  MK   +V+ +RG+
Sbjct:   61 QKAMEKARRNMVTVQL-KGDTLQHPVKGRHSGSQVYMQPASEGTGIIAGGAMRAVLEVSGVHNVLSKAYGSTNPINVVRATIKALNGMKSPEQVAAKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOMG (30S ribosomal protein S5 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    A++N++ VP+ +  T P+   G FGA +V+++PAS GTGVIAGGA R V E AG+ N L K LGSNN  N  +A    +++++   E+   RG+
Sbjct:   61 RKGVEQAKKNLIKVPIVEGQTIPYEVLGHFGAGRVLIKPASAGTGVIAGGAARAVFESAGLHNVLSKCLGSNNPHNVVKAAFDGLKQLRSPDEIMARRGM 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CYTH3 (30S ribosomal protein S5 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K+  DA++N++ VP+    T PH   G +    V ++PA+PGTGVIAGGA+R V E AG+++ L K  GS+N  N  +AT+ A+ KM+   +V+ +RG+ M
Sbjct:   67 KAIDDAKKNLIKVPVING-TLPHEMIGKYSGGFVFVKPAAPGTGVIAGGAMRAVFESAGIKDVLAKSKGSSNPHNVVKATIDALVKMRAPHKVAMQRGVAM 166          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_LACRD2.280e-1643.0030S ribosomal protein S5 OS=Lactobacillus reuteri ... [more]
RS5_GEOSL2.280e-1642.0030S ribosomal protein S5 OS=Geobacter sulfurreduce... [more]
RS5_CHLSY2.280e-1646.9430S ribosomal protein S5 OS=Chloroflexus aurantiac... [more]
RS5_CHLAA2.280e-1646.9430S ribosomal protein S5 OS=Chloroflexus aurantiac... [more]
RS5_ALKOO2.280e-1643.4330S ribosomal protein S5 OS=Alkaliphilus oremlandi... [more]
RS5_SHEAM2.977e-1648.0030S ribosomal protein S5 OS=Shewanella amazonensis... [more]
RS5_MESFL2.977e-1631.5830S ribosomal protein S5 OS=Mesoplasma florum GN=r... [more]
RS5_IDILO2.977e-1647.0030S ribosomal protein S5 OS=Idiomarina loihiensis ... [more]
RS5_GEOMG2.977e-1642.0030S ribosomal protein S5 OS=Geobacter metallireduc... [more]
RS5_CYTH32.977e-1642.5730S ribosomal protein S5 OS=Cytophaga hutchinsonii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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