CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHEFN (30S ribosomal protein S5 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    +KV ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSKVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPAQIAAKRGL 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHEDO (30S ribosomal protein S5 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    +KV ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSKVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPAQIAAKRGL 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCCT (30S ribosomal protein S5 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rpsE PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = -1
Query:  204 TKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 674
            ++++ VKD FEE                  +F A+                       ++K+  +A++N+V+V + +  T PH   G FGA K++++PA  GTG+IAGG  R V+E++G+ +   K LGSNNA+N  RAT   +  M+  + V   R
Sbjct:   36 SRQKVVKDEFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLVSVTL-RNTTVPHEVLGTFGAGKILIKPAKVGTGIIAGGPARAVIELSGISDVYAKSLGSNNAINMIRATFEGLSSMQTLKRVQELR 191          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MICLU (30S ribosomal protein S5 OS=Micrococcus luteus GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +A+++   VP     T PH   G+  A  V+LRPASPGT VIAGG VR VLE AG+ + L K +GS NA+N  R TV  ++K+K  + V+  RG
Sbjct:   58 QKAVEEAKKSFFRVPRVGS-TIPHLVQGEDAAGVVLLRPASPGTAVIAGGPVRAVLECAGIHDVLSKSMGSVNAINIVRGTVEGLKKLKSPQAVAARRG 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOD6 (30S ribosomal protein S5 OS=Clostridium difficile (strain 630) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.888e-16
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA  +++ PA  GTGVIAGG  R VLE+AG+++   K LGSNN  N   AT+  +  +K   ++++ RG
Sbjct:   64 KKAVEDAKKNLIVVPIVG-TTIPHEVRGHFGAGNILIMPAVEGTGVIAGGPARAVLELAGLKDVRAKSLGSNNPRNMVNATIEGLNSLKTVEDIAKLRG 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   AR++++ VP+    T PH + G +G  +++++PA  G+GV AGGAVR V+E+AG+++   K+LGSN A+N  RAT   ++ M+   EV+  RG+
Sbjct:   62 RKAVETARKSLIEVPIVG-TTLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDVTSKRLGSNTAVNVVRATFEGLKSMRNAEEVAALRGV 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAES2 (30S ribosomal protein S5 OS=Haemophilus somnus (strain 2336) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++TV + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMITVALNEG-TLQHPIKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAES1 (30S ribosomal protein S5 OS=Haemophilus somnus (strain 129Pt) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++TV + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMITVALNEG-TLQHPIKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANADE (30S ribosomal protein S5 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.078e-16
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++N+  VP+    T PH   G FG+ +V+L+PA  GTGVIAGGAVR VLE AGV N L K  GS N  N  +ATV  +++++   + +R RG
Sbjct:   63 RKGGDQAKKNLFRVPLVG-TTIPHEVLGHFGSGRVLLKPAGEGTGVIAGGAVRAVLEAAGVRNVLTKSQGSRNPHNVLKATVAGLKRLRSVEDSARLRG 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_COLP3 (30S ribosomal protein S5 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A RNIVT+ + K  T  H   G    +KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N  RATV A+  M     ++ +RG
Sbjct:   64 QKAMEKAHRNIVTIDL-KGTTLQHVITGKHSGSKVFMKPASEGTGIIAGGAMRAVLEVAGVQNVLSKAYGSTNPINVVRATVSALVNMHSPEGMAAKRG 161          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_SHEFN3.888e-1648.0030S ribosomal protein S5 OS=Shewanella frigidimari... [more]
RS5_SHEDO3.888e-1648.0030S ribosomal protein S5 OS=Shewanella denitrifica... [more]
RS5_MYCCT3.888e-1630.5730S ribosomal protein S5 OS=Mycoplasma capricolum ... [more]
RS5_MICLU3.888e-1646.4630S ribosomal protein S5 OS=Micrococcus luteus GN=... [more]
RS5_CLOD63.888e-1641.4130S ribosomal protein S5 OS=Clostridium difficile ... [more]
RS5_PEDPA5.078e-1640.0030S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]
RS5_HAES25.078e-1646.4630S ribosomal protein S5 OS=Haemophilus somnus (st... [more]
RS5_HAES15.078e-1646.4630S ribosomal protein S5 OS=Haemophilus somnus (st... [more]
RS5_ANADE5.078e-1645.4530S ribosomal protein S5 OS=Anaeromyxobacter dehal... [more]
RS5_COLP36.633e-1647.4730S ribosomal protein S5 OS=Colwellia psychrerythr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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