CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BIFLO (30S ribosomal protein S5 OS=Bifidobacterium longum GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K  +DA++++ +VP  +  T  H   G   A  V+LRPA+PGTGVIAGG+VR V+E AG+ + L K +GS  A+N  RATV A++++++  E++  RG+ +
Sbjct:   96 KGQLDAKKHMFSVPRVRG-TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSATAVNVVRATVDALKQLEEPEEIAARRGLAL 195
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BIFLI (30S ribosomal protein S5 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K  +DA++++ +VP  +  T  H   G   A  V+LRPA+PGTGVIAGG+VR V+E AG+ + L K +GS  A+N  RATV A++++++  E++  RG+ +
Sbjct:  106 KGQLDAKKHMFSVPRVRG-TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSATAVNVVRATVDALKQLEEPEEIAARRGLAL 205
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BIFLD (30S ribosomal protein S5 OS=Bifidobacterium longum (strain DJO10A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K  +DA++++ +VP  +  T  H   G   A  V+LRPA+PGTGVIAGG+VR V+E AG+ + L K +GS  A+N  RATV A++++++  E++  RG+ +
Sbjct:  106 KGQLDAKKHMFSVPRVRG-TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSATAVNVVRATVDALKQLEEPEEIAARRGLAL 205
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BAUCH (30S ribosomal protein S5 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+ T+ +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+ G+ N L K  GS N +N  RAT+ A+ KMK    ++ +RG
Sbjct:   61 QKAMDKARRNMTTIVLNSGGTLQHSIKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVTGIRNVLAKTYGSTNPINVVRATINALNKMKSPEMIAAKRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ALTMD (30S ribosomal protein S5 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+V V +  + T  H   G    +KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N  RAT+ A+ +M    +V+ +RG+
Sbjct:   61 QKAMEKARRNMVDVDLNGH-TLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLSKCYGSTNPINVVRATINALTEMNSPAKVAAKRGL 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_WIGBR (30S ribosomal protein S5 OS=Wigglesworthia glossinidia brevipalpis GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR+N++ +P+    T  H  +G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A++KM+    ++ +RG
Sbjct:   61 QKAMDKARKNMIIIPIV-CKTLQHEINGYHTGSRVFMKPASEGTGIIAGGAMRAVLEVAGVHNVLAKVYGSTNPINVVRATVNALKKMRFPMHIAEKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHESW (30S ribosomal protein S5 OS=Shewanella sp. (strain W3-18-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHESR (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-7) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHESM (30S ribosomal protein S5 OS=Shewanella sp. (strain MR-4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHESA (30S ribosomal protein S5 OS=Shewanella sp. (strain ANA-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN+VTV +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RATV A+  MK   +++ +RG+
Sbjct:   62 QKAMEKARRNMVTVELNAG-TLHHPVKGRHTGSRVYMQPASQGTGIIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATVDALVHMKSPSQIAAKRGL 160
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_BIFLO6.633e-1642.5730S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLI6.633e-1642.5730S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLD6.633e-1642.5730S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BAUCH6.633e-1643.4330S ribosomal protein S5 OS=Baumannia cicadellinic... [more]
RS5_ALTMD6.633e-1646.0030S ribosomal protein S5 OS=Alteromonas macleodii ... [more]
RS5_WIGBR8.663e-1644.4430S ribosomal protein S5 OS=Wigglesworthia glossin... [more]
RS5_SHESW8.663e-1647.0030S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHESR8.663e-1647.0030S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHESM8.663e-1647.0030S ribosomal protein S5 OS=Shewanella sp. (strain... [more]
RS5_SHESA8.663e-1647.0030S ribosomal protein S5 OS=Shewanella sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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