CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLONN (30S ribosomal protein S5 OS=Clostridium novyi (strain NT) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++++V V M    T PH   G+FG  +V++ PA+ GTGVIAGG VR VLE+AG+++   K LGSNN  N   AT+  + +++   ++++ RG
Sbjct:   60 RKGIEDAKKHLVEVAMVD-TTVPHAIQGEFGRGRVLIMPATEGTGVIAGGPVRAVLELAGLKDVRAKSLGSNNPKNMVGATINGLSRLRTAEQIAKLRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOAB (30S ribosomal protein S5 OS=Clostridium acetobutylicum GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V V +    T PH   G+FG  +V++ PAS GTGVIAGG VR VLE+AG+ +   K LGSNN  N   AT+  + +++   +++  RG
Sbjct:   60 RKGIEDAKKNLVEVAIVG-TTVPHEIYGEFGTGRVLIMPASEGTGVIAGGPVRAVLELAGLNDVRAKSLGSNNPRNMVNATINGLSRLRTVEQIAALRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ALKMQ (30S ribosomal protein S5 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 42/99 (42.42%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++N++ VP T   T PH   G FGA  V++ PA  GTG+IAGG VR VLE+AG+++   K LG+NN+ N   AT+  ++++K+  +V++ RG
Sbjct:   64 RKGIQAAKKNLLLVP-TVGTTVPHEVIGHFGAGNVLIMPAKEGTGIIAGGPVRAVLELAGIKDVRAKSLGTNNSRNMVSATMDGLRQLKRAEDVAKLRG 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACTP2 (30S ribosomal protein S5 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPVKGSHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIBL (30S ribosomal protein S5 OS=Acidobacteria bacterium (strain Ellin345) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++N+V V +++  + PH+  G +G+ +VML+PA  GTGVIAGGAVR V+  AGV+N L K +G+ N  N  +AT  A+++++  REV+  RG
Sbjct:   66 RKGIESAKKNLVKVNLSQ-TSIPHQVLGRYGSGRVMLKPAPEGTGVIAGGAVRAVMTSAGVQNVLTKSIGTTNPHNVIKATFEALKQLRDRREVAAGRG 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SULNB (30S ribosomal protein S5 OS=Sulfurovum sp. (strain NBC37-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +N+V V + K  T  H  +  F A++++LRPAS GTGVIAGGA R VLE+AG+++ L K +GSNN  N  RAT+ A+ ++K
Sbjct:   64 KKAVDDAHKNLVKVNI-KGTTIAHDIEHKFNASRIVLRPASEGTGVIAGGAARPVLELAGIQDVLSKSIGSNNPNNLVRATIQALTRIK 151          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MESSB (30S ribosomal protein S5 OS=Mesorhizobium sp. (strain BNC1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+ +  T  H   G  GA +V++R A PGTG+IAGG +R V E  GV++ + K LGS+N  N  RAT  A+++    ++++ +RGI
Sbjct:   69 RKATESAKRDLIFVPLREGRTLHHDVGGHHGAGRVLMRAAKPGTGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKRQMHPKDIAAQRGI 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACS1 (30S ribosomal protein S5 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  198 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            + AVDA R+N++ VP T   T PH   G +  +++ML+PA  G+GV AGGAVR V+E+AG+ +   K LGSN  +N  RAT   +  MK    V++ RG+
Sbjct:   61 RKAVDAARKNLIEVP-TVGTTLPHEVIGQYSGSRIMLKPAIAGSGVAAGGAVRAVMELAGIADVTSKSLGSNTPVNVVRATFDGLVNMKDAESVAKLRGV 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESAD (30S ribosomal protein S5 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K++  AR+ +++VP+    T P+   G +GA +VML+PAS GTG+IAGG VR VLE+ GV + L K +G+NN  N  RAT+  +  ++   EV + RG
Sbjct:   58 RKASEKARKEMISVPLLDG-TLPYEVLGRYGAGRVMLKPASKGTGIIAGGPVRAVLEVVGVHDILTKAIGTNNPHNVLRATIAGLASLRSADEVGQLRG 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSYIN (30S ribosomal protein S5 OS=Psychromonas ingrahamii (strain 37) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRNI  V + K  T  H   G    +KV ++PAS GTG+IAGGA+R VLE+ GV+N L K  GS N +N  RAT+ A++ M    +++ +RG+
Sbjct:   62 QKAMEKARRNIRDVQL-KGNTLQHPIKGRHSGSKVYMQPASEGTGIIAGGAMRAVLEVVGVQNVLSKAYGSTNPINVVRATLDALENMNSPEQIAAKRGL 160          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CLONN1.930e-1541.4130S ribosomal protein S5 OS=Clostridium novyi (str... [more]
RS5_CLOAB1.930e-1542.4230S ribosomal protein S5 OS=Clostridium acetobutyl... [more]
RS5_ALKMQ1.930e-1542.4230S ribosomal protein S5 OS=Alkaliphilus metallire... [more]
RS5_ACTP21.930e-1545.4530S ribosomal protein S5 OS=Actinobacillus pleurop... [more]
RS5_ACIBL1.930e-1543.4330S ribosomal protein S5 OS=Acidobacteria bacteriu... [more]
RS5_SULNB2.520e-1548.3130S ribosomal protein S5 OS=Sulfurovum sp. (strain... [more]
RS5_MESSB2.520e-1539.0030S ribosomal protein S5 OS=Mesorhizobium sp. (str... [more]
RS5_LACS12.520e-1544.0030S ribosomal protein S5 OS=Lactobacillus salivari... [more]
RS5_DESAD2.520e-1543.4330S ribosomal protein S5 OS=Desulfovibrio salexige... [more]
RS5_PSYIN3.292e-1545.0030S ribosomal protein S5 OS=Psychromonas ingrahami... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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