CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PASMU (30S ribosomal protein S5 OS=Pasteurella multocida GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPIKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESVM (30S ribosomal protein S5 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 43/102 (42.16%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+   A++++V +P+    T P+   G+FGA  VML+PAS GTG+IAGGAVR V+E  GV + L K +G+NN  N  RAT+  +  ++    VS+ RG+ +
Sbjct:   58 RKATERAKKDMVQIPLVDG-TLPYEILGEFGAGCVMLKPASKGTGIIAGGAVRAVMEAVGVTDVLAKAIGTNNPHNVLRATMAGLTSLRSAEYVSQLRGMKL 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BUCAP (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN+VT+P+    T  H   G    + + ++PAS GTG+IAGGA+R VLE+AG+ N L K  GS N +N  RAT+  +  MK    ++ +R
Sbjct:   62 QKAMEKARRNMVTIPLVNK-TLQHSLKGSHTGSNIFMKPASDGTGIIAGGAMRAVLEVAGIHNVLAKTYGSTNPINVVRATMNGLTNMKSPEMIAAKR 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BUCAI (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN++T+P+    T  H   G    + V ++PAS GTG+IAGGA+R VLE+AG+ N L K  GS N +N  RAT+  +  MK    ++ +R
Sbjct:   62 QKAMEQARRNMITIPLVNK-TLQHSLKGSHTGSNVFMKPASDGTGIIAGGAMRAVLEVAGIHNVLAKTYGSTNPINVVRATMNGLVNMKSPEMIAAKR 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BORGA (30S ribosomal protein S5 OS=Borrelia garinii GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   AR+N+  VP+ K  T PH   G F  AKV+++PA+ GTGVIAGG VR V+E  GV + L K LGSNN++N  +AT  A   +    +V+  RG
Sbjct:   60 KKSLTSARKNLRFVPIRKG-TLPHEVIGCFKKAKVLIKPATHGTGVIAGGPVRAVMEALGVHDILSKSLGSNNSMNVVKATFKAFDLVLNAEKVAEMRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BORBU (30S ribosomal protein S5 OS=Borrelia burgdorferi GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.292e-15
Identity = 46/99 (46.46%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   AR+N+  VP+ K  T PH   G F  AKV+++PA+ GTGVIAGG VR V+E  GV + L K LGSNN++N  +AT  A   +    +V+  RG
Sbjct:   60 KKSLTSARKNLRFVPIRKG-TLPHEVIGCFKKAKVLIKPATHGTGVIAGGPVRAVMEALGVHDILSKSLGSNNSMNVVKATFKAFDLVLNAEKVAEMRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANOR (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANOP (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANOM (30S ribosomal protein S5 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANCP (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_PASMU3.292e-1545.4530S ribosomal protein S5 OS=Pasteurella multocida ... [more]
RS5_DESVM3.292e-1542.1630S ribosomal protein S5 OS=Desulfovibrio vulgaris... [more]
RS5_BUCAP3.292e-1542.8630S ribosomal protein S5 OS=Buchnera aphidicola su... [more]
RS5_BUCAI3.292e-1542.8630S ribosomal protein S5 OS=Buchnera aphidicola su... [more]
RS5_BORGA3.292e-1546.4630S ribosomal protein S5 OS=Borrelia garinii GN=rp... [more]
RS5_BORBU3.292e-1546.4630S ribosomal protein S5 OS=Borrelia burgdorferi G... [more]
RS5_XANOR4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas oryzae pv.... [more]
RS5_XANOP4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas oryzae pv.... [more]
RS5_XANOM4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas oryzae pv.... [more]
RS5_XANCP4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas campestris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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