CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANCB (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANC8 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANC5 (30S ribosomal protein S5 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XANAC (30S ribosomal protein S5 OS=Xanthomonas axonopodis pv. citri GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+ TV +    T  H      GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  + +++    V+ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGLGKVGFGYGKAREVPVAIQKSMEQARKNLATVDLNNG-TLWHAVKSGHGAARVYMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKAVGSRNPINLVRATLKGLSEVQSPARVAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEHT (30S ribosomal protein S5 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+ GV+N L K  GS N +N  RAT+ A++ M   + ++ +RG+
Sbjct:   63 QKAMEKARRNMINVDLNGN-TLQHPVKGRHAGSQVFMKPASEGTGIIAGGAMRAVLEVTGVQNVLSKCYGSTNPINVVRATISALENMNSPQSIAAKRGL 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PARUW (30S ribosomal protein S5 OS=Protochlamydia amoebophila (strain UWE25) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    AR+N+++ P T+  T PH     +  A V+L+PA  GTGVIAG  VR VLE+AG+++ + K LGS+N +N  +AT  A+Q++    E+ + RG+
Sbjct:   69 RKGGEAARKNMISCP-TEGTTIPHEVTVQWDGASVLLKPAPFGTGVIAGSKVRAVLELAGIKDVMAKNLGSSNPINQVKATFQAIQQLLTRDEIKQRRGV 167          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PARDP (30S ribosomal protein S5 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R+++ VP+    T  H  +G  GA KV++R A PGTG+IAGG +R V EM GV++ + K  GS N  N  RAT+  ++K    R V++ RG
Sbjct:   70 RKATEQAKRSLIRVPLRDGRTLHHDIEGRHGAGKVIMRTAVPGTGIIAGGPMRAVFEMLGVQDVVAKSQGSQNPYNMIRATIDGLKKEASPRNVAQRRG 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PARD8 (30S ribosomal protein S5 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    A++N++ VP+ K  T PH     FG A+V++RPAS GTGV AGGA+R VLE  G+ + L K  GS+N  N  +AT+ A+ +++   +V++ RG+
Sbjct:   65 KGVEAAKKNLIKVPVHKG-TIPHEQLAKFGGAQVLIRPASHGTGVKAGGAMRAVLESVGITDVLAKSKGSSNPHNLVKATIAALGELRSPFDVAQNRGV 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAEIN (30S ribosomal protein S5 OS=Haemophilus influenzae GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAEIG (30S ribosomal protein S5 OS=Haemophilus influenzae (strain PittGG) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_XANCB4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas campestris... [more]
RS5_XANC84.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas campestris... [more]
RS5_XANC54.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas campestris... [more]
RS5_XANAC4.299e-1533.9630S ribosomal protein S5 OS=Xanthomonas axonopodis... [more]
RS5_PSEHT4.299e-1542.0030S ribosomal protein S5 OS=Pseudoalteromonas halo... [more]
RS5_PARUW4.299e-1541.0030S ribosomal protein S5 OS=Protochlamydia amoebop... [more]
RS5_PARDP4.299e-1541.4130S ribosomal protein S5 OS=Paracoccus denitrifica... [more]
RS5_PARD84.299e-1542.4230S ribosomal protein S5 OS=Parabacteroides distas... [more]
RS5_HAEIN4.299e-1545.4530S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_HAEIG4.299e-1545.4530S ribosomal protein S5 OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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