CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAEIE (30S ribosomal protein S5 OS=Haemophilus influenzae (strain PittEE) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAEI8 (30S ribosomal protein S5 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNEG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESPS (30S ribosomal protein S5 OS=Desulfotalea psychrophila GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    AR+++  V +T  ++ PH+  G +GA +V LRPAS GTG+IAGG VR VLE AGV N L K LGS+N  N  +AT+  +++++  ++++  RG
Sbjct:   66 RKGVERARKDMALVSLTD-VSIPHQVIGHYGAGRVFLRPASAGTGLIAGGPVRAVLEAAGVSNILTKCLGSHNPHNMVKATIDGLKQLRSAQKIAELRG 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BIFA0 (30S ribosomal protein S5 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K  +DA++++  VP  +  T  H   G   A  VMLRPA+PGTGVIAG AVR V+E AG+ + L K +GS  A+N  RATV A++++++  E++  RG+
Sbjct:  108 KGQLDAKKHLFNVPRIRG-TVTHPVTGHDHAGTVMLRPAAPGTGVIAGSAVRAVMECAGITDILTKSMGSATAVNVVRATVDALKQLEEPEEIAARRGL 205          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BARBK (30S ribosomal protein S5 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 39/100 (39.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R ++ VP+    T  H  +G  GA +V+LR AS GTG+IAGG++R + E  G+++ + K LGS+N  N  RAT  A+++    R+++ +RGI
Sbjct:   73 RKATESAKREMIYVPLRSGRTLHHDVEGRHGAGRVLLRSASAGTGIIAGGSMRAIFETLGMQDVVAKSLGSSNPYNMVRATFDALKRQMHPRDIAAQRGI 172          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANADF (30S ribosomal protein S5 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K    A++N+  VP+    T PH   G FGA  V+L+PA  GTGVIAGG VR VLE AG+ N L K  GS N  N  +ATV  +++++   + +R RG
Sbjct:   62 RKGGDQAKKNLFKVPLVG-TTIPHEVLGHFGAGWVLLKPAGEGTGVIAGGTVRAVLEAAGIRNVLTKCQGSRNPHNVLKATVAGLKRLRSADDAARARG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ALISL (30S ribosomal protein S5 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QKS   ARRN+ T+ + +  T  H   G    +KV ++PAS GTG+IAGGA+R VLE+ GV N L K  GS N +N  RAT++ +  +K    V+ +RG+
Sbjct:   61 QKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPASEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATILGLTSVKSPEMVAAKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_TREDE (30S ribosomal protein S5 OS=Treponema denticola GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +KS   A+ N+VT P+ K  T PH   G F  + V+LRPA  GTG+IAGG +R ++E AG  + L K LGS++A+N  +AT  A   +   +++++ RG
Sbjct:   68 RKSIEKAKANMVTFPL-KNGTIPHEVQGKFKGSSVLLRPACSGTGIIAGGTIRAIMEAAGATDLLSKSLGSSSAVNVVKATFDAASLLMDGKKIAKSRG 165          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MARAV (30S ribosomal protein S5 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMT-KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR+N+V V +    L +P R+    G +KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N  R+T+  +Q MK   +V+ +RG
Sbjct:   61 QKAMEAARKNMVDVALDGTTLQYPVRAQ--HGGSKVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLSKCYGSTNPVNVVRSTIKGLQAMKAPEDVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_KLEP7 (30S ribosomal protein S5 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +  + T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALN-HGTLQHPVKGTHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLAKAYGSTNPINVVRATIDGLENMKSPDMVAAKRG 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_HAEIE4.299e-1545.4530S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_HAEI84.299e-1545.4530S ribosomal protein S5 OS=Haemophilus influenzae... [more]
RS5_DESPS4.299e-1543.4330S ribosomal protein S5 OS=Desulfotalea psychroph... [more]
RS5_BIFA04.299e-1544.4430S ribosomal protein S5 OS=Bifidobacterium animal... [more]
RS5_BARBK4.299e-1539.0030S ribosomal protein S5 OS=Bartonella bacilliform... [more]
RS5_ANADF4.299e-1544.4430S ribosomal protein S5 OS=Anaeromyxobacter sp. (... [more]
RS5_ALISL4.299e-1544.0030S ribosomal protein S5 OS=Aliivibrio salmonicida... [more]
RS5_TREDE5.615e-1541.4130S ribosomal protein S5 OS=Treponema denticola GN... [more]
RS5_MARAV5.615e-1546.0030S ribosomal protein S5 OS=Marinobacter aquaeolei... [more]
RS5_KLEP75.615e-1544.4430S ribosomal protein S5 OS=Klebsiella pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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