CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BARHE (30S ribosomal protein S5 OS=Bartonella henselae GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R ++ VP+    T  H  +G  GA +V+LR AS GTG+IAGG +R + E  G+++ + K LGS+N  N  RAT  A+++    R+++ +RGI
Sbjct:   66 RKATESAKRGMIYVPLRSGRTLHHDLEGHHGAGRVLLRSASAGTGIIAGGPMRAIFETLGMQDVVAKSLGSSNPYNMVRATFDALKRQMHPRDIAAQRGI 165
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACTSZ (30S ribosomal protein S5 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNDG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPETVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_VIBCM (30S ribosomal protein S5 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARR++VT+ + +  T  H   G    +KV ++PA+ GTGVIAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  +K    V+ +RG+
Sbjct:   62 QKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_VIBCH (30S ribosomal protein S5 OS=Vibrio cholerae GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARR++VT+ + +  T  H   G    +KV ++PA+ GTGVIAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  +K    V+ +RG+
Sbjct:   62 QKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_VIBC3 (30S ribosomal protein S5 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = -1 
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+   ARR++VT+ + +  T  H   G    +KV ++PA+ GTGVIAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  +K    V+ +RG+
Sbjct:   62 QKAMEKARRSMVTIALNEG-TLHHPVKGRHSGSKVYMQPAAEGTGVIAGGAMRAVLEVAGVHNVLSKAYGSTNPINIVRATIDALVDVKSPEMVAAKRGL 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALAI (30S ribosomal protein S5 OS=Salinispora arenicola (strain CNS-205) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = -1 
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     + PH   G+  A  V+L+PAS GTGVIAGG VR VLE AG+ + L K LGS+N +N   ATV A++ ++    V+  RG+P+
Sbjct:   88 KGVEEAKKHFFKVPRIGQ-SIPHPVQGEDAAGVVLLKPASAGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNPINIVHATVAALKGLESPEAVASRRGLPV 187
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MANSM (30S ribosomal protein S5 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + +  T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALHEG-TLQHPVKGIHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALANMKSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEGPL (30S ribosomal protein S5 OS=Legionella pneumophila (strain Lens) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A++N+V +P++    F H    ++GA+KV ++PAS GTG+IAGGA+R VLE+ GV+N L K +GS N  N  RAT+ A+  +     V+ +RG
Sbjct:   62 QKAMDQAKKNMVYIPLSGTTIF-HEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEGPH (30S ribosomal protein S5 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A++N+V +P++    F H    ++GA+KV ++PAS GTG+IAGGA+R VLE+ GV+N L K +GS N  N  RAT+ A+  +     V+ +RG
Sbjct:   62 QKAMDQAKKNMVYIPLSGTTIF-HEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEGPC (30S ribosomal protein S5 OS=Legionella pneumophila (strain Corby) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A++N+V +P++    F H    ++GA+KV ++PAS GTG+IAGGA+R VLE+ GV+N L K +GS N  N  RAT+ A+  +     V+ +RG
Sbjct:   62 QKAMDQAKKNMVYIPLSGTTIF-HEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRG 159
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_BARHE5.615e-1539.0030S ribosomal protein S5 OS=Bartonella henselae GN... [more]
RS5_ACTSZ5.615e-1545.4530S ribosomal protein S5 OS=Actinobacillus succino... [more]
RS5_VIBCM7.333e-1545.0030S ribosomal protein S5 OS=Vibrio cholerae seroty... [more]
RS5_VIBCH7.333e-1545.0030S ribosomal protein S5 OS=Vibrio cholerae GN=rps... [more]
RS5_VIBC37.333e-1545.0030S ribosomal protein S5 OS=Vibrio cholerae seroty... [more]
RS5_SALAI7.333e-1542.5730S ribosomal protein S5 OS=Salinispora arenicola ... [more]
RS5_MANSM7.333e-1545.4530S ribosomal protein S5 OS=Mannheimia succinicipr... [more]
RS5_LEGPL7.333e-1543.4330S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_LEGPH7.333e-1543.4330S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_LEGPC7.333e-1543.4330S ribosomal protein S5 OS=Legionella pneumophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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