CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LEGPA (30S ribosomal protein S5 OS=Legionella pneumophila (strain Paris) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   A++N+V +P++    F H    ++GA+KV ++PAS GTG+IAGGA+R VLE+ GV+N L K +GS N  N  RAT+ A+  +     V+ +RG
Sbjct:   62 QKAMDQAKKNMVYIPLSGTTIF-HEITWNYGASKVFMKPASEGTGIIAGGAMRAVLEVLGVQNILAKSIGSTNPSNIVRATIGALTHIGTPDYVAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACICJ (30S ribosomal protein S5 OS=Acidiphilium cryptum (strain JF-5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VPM +  T  H  +G FGA  V+LR A PGTG+IAGG +R V E  G+ + + K LGS N  N  +ATV A+ +    R V+  RG
Sbjct:   72 RKATERAKRGMIRVPMKEGRTLHHDIEGRFGAGHVVLRAAPPGTGIIAGGPMRAVFETLGIGDVVAKSLGSRNPHNMVKATVAALSQCASPRSVASRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERPS (30S ribosomal protein S5 OS=Yersinia pseudotuberculosis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERPP (30S ribosomal protein S5 OS=Yersinia pestis (strain Pestoides F) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERPN (30S ribosomal protein S5 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERPE (30S ribosomal protein S5 OS=Yersinia pestis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERPA (30S ribosomal protein S5 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERP3 (30S ribosomal protein S5 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_VIBFM (30S ribosomal protein S5 OS=Vibrio fischeri (strain MJ11) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QKS   ARRN+ T+ + +  T  H   G    +KV ++PA+ GTG+IAGGA+R VLE+ GV N L K  GS N +N  RAT+  +  +K    V+ +RG+
Sbjct:   61 QKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPAAEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATIAGLSSVKSPEMVAAKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_VIBF1 (30S ribosomal protein S5 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QKS   ARRN+ T+ + +  T  H   G    +KV ++PA+ GTG+IAGGA+R VLE+ GV N L K  GS N +N  RAT+  +  +K    V+ +RG+
Sbjct:   61 QKSMEKARRNMFTIALNEG-TLHHAVKGRHTGSKVYMQPAAEGTGIIAGGAMRAVLEVVGVRNVLAKAYGSTNPINVVRATIAGLSSVKSPEMVAAKRGL 159          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_LEGPA7.333e-1543.4330S ribosomal protein S5 OS=Legionella pneumophila... [more]
RS5_ACICJ7.333e-1542.4230S ribosomal protein S5 OS=Acidiphilium cryptum (... [more]
RS5_YERPS9.578e-1544.4430S ribosomal protein S5 OS=Yersinia pseudotubercu... [more]
RS5_YERPP9.578e-1544.4430S ribosomal protein S5 OS=Yersinia pestis (strai... [more]
RS5_YERPN9.578e-1544.4430S ribosomal protein S5 OS=Yersinia pestis bv. An... [more]
RS5_YERPE9.578e-1544.4430S ribosomal protein S5 OS=Yersinia pestis GN=rps... [more]
RS5_YERPA9.578e-1544.4430S ribosomal protein S5 OS=Yersinia pestis bv. An... [more]
RS5_YERP39.578e-1544.4430S ribosomal protein S5 OS=Yersinia pseudotubercu... [more]
RS5_VIBFM9.578e-1543.0030S ribosomal protein S5 OS=Vibrio fischeri (strai... [more]
RS5_VIBF19.578e-1543.0030S ribosomal protein S5 OS=Vibrio fischeri (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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