CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRM5 (30S ribosomal protein S5 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            + ++EKV DG  E                Q  F A+                       +QKS   AR+N+V+V +     +    DG  GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K  GS N +N  RATV  +   +    ++ +RG
Sbjct:   14 RNREEKVDDGMIEKLVAVNRVSKTVKGGRQFTFTALTVVGDGEGKVGFGYGKAREVPVAIQKSMEQARKNLVSVDLNNGTLWHTIKDGH-GAARVFMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKATGSRNPINLVRATVKGLSAAQSPARIAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SERP5 (30S ribosomal protein S5 OS=Serratia proteamaculans (strain 568) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALNSG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RALSO (30S ribosomal protein S5 OS=Ralstonia solanacearum GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V VP+ K  T  H   G  GAAKV++ PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  ++KM    E++ +RG
Sbjct:   67 QKAMDEARRKMVKVPL-KNGTLQHEVIGKHGAAKVLMAPAKEGTGVIAGGPMRAIFEVMGVTNIVTKSHGSTNPYNMVRATLDGLRKMSTPAEIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_OENOB (30S ribosomal protein S5 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+  DA+R+++ VP T   T PH+  G  G  KV+L+PAS G+GV AGG+ R ++E+AG+ +   K LGS+ A+N  RAT   ++ +K+ + V+  RG+ +
Sbjct:   63 RKAVEDAKRHLIKVP-TVGTTIPHQVLGVDGGGKVLLKPASEGSGVAAGGSTRPIMELAGIPDVTAKSLGSSTAVNVVRATFDGLKNLKEAKVVAALRGVSL 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HAHCH (30S ribosomal protein S5 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMT-KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR+N++TV +    L +P ++    G+AKV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N  RAT   ++ M+   E++ +RG
Sbjct:   62 QKAMDAARKNMITVTLNGNTLQYPVKAR--HGSAKVFMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVRATFEGLKAMQAPEEIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ENTS8 (30S ribosomal protein S5 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +  + T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  +  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMINVALN-HGTLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DINSH (30S ribosomal protein S5 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VP+ +  T  H  +G  GA KVM+R A  GTG+IAGG +R V EM GV++ + K +GS N  N  RAT+  ++K    R V++ RG
Sbjct:   70 RKATEQAKRQMIRVPLREGRTLHHDIEGRHGAGKVMMRTAPQGTGIIAGGPMRAVFEMLGVQDVVAKSIGSQNPYNMIRATLDGLRKETSPRMVAQRRG 168          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESVV (30S ribosomal protein S5 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+++++ VP+    T P+   G FGA  V+L+PAS GTG+IAGGAVR V+E  GV + L K +G+NN  N  RATV  +  ++   EV + RG
Sbjct:   58 RKATERAKKSMIEVPLIDG-TLPYEILGRFGAGHVLLKPASKGTGIIAGGAVRAVMEAVGVTDVLTKAIGTNNPHNVLRATVAGLASLRSAEEVGQLRG 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESVH (30S ribosomal protein S5 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+++++ VP+    T P+   G FGA  V+L+PAS GTG+IAGGAVR V+E  GV + L K +G+NN  N  RATV  +  ++   EV + RG
Sbjct:   58 RKATERAKKSMIEVPLIDG-TLPYEILGRFGAGHVLLKPASKGTGIIAGGAVRAVMEAVGVTDVLTKAIGTNNPHNVLRATVAGLASLRSAEEVGQLRG 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLAB (30S ribosomal protein S5 OS=Chlamydophila abortus GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    AR+N++T+   +  + PH    D   A+++L+PA PGTG++AG  +R++LEMAGV+N + K LGSNN +N  +A   A+  +   ++V   R +
Sbjct:   63 RKGGEAARKNLITIESLEGDSIPHEVLVDQDGAQLLLKPAKPGTGIVAGSRIRLILEMAGVKNIVAKSLGSNNPMNQVKAAFKALLSLSSRKDVLTRRKV 162          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_STRM59.578e-1533.9630S ribosomal protein S5 OS=Stenotrophomonas malto... [more]
RS5_SERP59.578e-1544.4430S ribosomal protein S5 OS=Serratia proteamaculan... [more]
RS5_RALSO9.578e-1545.4530S ribosomal protein S5 OS=Ralstonia solanacearum... [more]
RS5_OENOB9.578e-1540.2030S ribosomal protein S5 OS=Oenococcus oeni (strai... [more]
RS5_HAHCH9.578e-1545.0030S ribosomal protein S5 OS=Hahella chejuensis (st... [more]
RS5_ENTS89.578e-1544.4430S ribosomal protein S5 OS=Enterobacter sakazakii... [more]
RS5_DINSH9.578e-1541.4130S ribosomal protein S5 OS=Dinoroseobacter shibae... [more]
RS5_DESVV9.578e-1543.4330S ribosomal protein S5 OS=Desulfovibrio vulgaris... [more]
RS5_DESVH9.578e-1543.4330S ribosomal protein S5 OS=Desulfovibrio vulgaris... [more]
RS5_CHLAB9.578e-1537.0030S ribosomal protein S5 OS=Chlamydophila abortus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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