CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMC5 (30S ribosomal protein S5 OS=Campylobacter curvus (strain 525.92) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NI+ V + K  T PH  +  + A++++LRPAS GTGVIAGG  R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAIDDAFKNIIHVKL-KGSTIPHDVEVKYNASRILLRPASEGTGVIAGGGARPIIELAGIKDILTKSLGSNNSANVVRATIKALSLLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BUCCC (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Cinara cedri GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR+N++ +P+ K  T  H   G    + + ++PAS GTG+IAGGA+R VLE+AG++N L K  GS N +N  RAT+  ++K++    +S++RG
Sbjct:   61 QKAMEKARKNMIIIPLFKN-TIQHSVTGLHTGSFIFMKPASEGTGIIAGGAMRSVLEVAGIQNILAKIYGSTNPINVVRATLNGLKKIRSPEMISKKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_YERE8 (30S ribosomal protein S5 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARR ++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A++ MK    V+ +RG
Sbjct:   61 QKAMEKARRAMINVALDNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIAALEDMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_STRMK (30S ribosomal protein S5 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QKS   AR+N+V+V +     +    DG  GAA+V ++PAS GTGVIAGGA+R VLE  GV+N L K  GS N +N  RATV  +   +    ++ +RG
Sbjct:   74 QKSMEQARKNLVSVDLNNGTLWHTIKDGH-GAARVFMQPASEGTGVIAGGAMRAVLEAVGVKNVLAKATGSRNPINLVRATVKGLSAAQSPARIAAKRG 171          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SODGM (30S ribosomal protein S5 OS=Sodalis glossinidius (strain morsitans) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+ A+  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMMNVALNSG-TLQHPIKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDALGNMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RALPJ (30S ribosomal protein S5 OS=Ralstonia pickettii (strain 12J) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V VP+ K  T  H   G  GAAKV + PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  ++KM    EV+ +RG
Sbjct:   67 QKAMDEARRKMVKVPL-KNGTLQHEVVGKHGAAKVQMMPAKDGTGVIAGGPMRAIFEVMGVTNIVTKSHGSTNPYNMVRATLDGLRKMSTPAEVAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCPU (30S ribosomal protein S5 OS=Mycoplasma pulmonis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+  DA+ +++TVP+    T PH   G F ++KV+++ A  G G+IA GAVR V+E+AG  +   K  GS   +N  +ATV  ++KM+   E++  RG+
Sbjct:  123 KKAIKDAQNHLITVPIINESTVPHEMSGKFLSSKVIIKSAPKGKGIIASGAVRAVMELAGYTDIYAKSYGSRTKMNTVKATVETLKKMRTVEEIAALRGL 222          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MYCPE (30S ribosomal protein S5 OS=Mycoplasma penetrans GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K+   A+ N+  V M K  T  H   G  GA KV+++PA  GTGVIAGG +++VLE+ G ++   K LG N +LN  RAT+  +Q  K  +E +  R
Sbjct:  128 RKALKSAKNNMYKVKMNKNFTLYHEVIGKHGAGKVLIKPAPKGTGVIAGGPIKVVLELCGFKDVYSKNLGKNTSLNMVRATIKGLQMQKSPKEYATLR 225          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DESDG (30S ribosomal protein S5 OS=Desulfovibrio desulfuricans (strain G20) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A++ +V VP+    T P+   G FGA +V+L+PAS GTG+IAGGAVR ++E  G+ + L K +G+NN  N  RAT+  +  ++    VS+ RG
Sbjct:   58 RKATERAKKGMVQVPLVDG-TLPYEVLGAFGAGRVLLKPASKGTGIIAGGAVRAIMEAVGIHDVLAKAIGTNNPHNVLRATMAGLTSLRSAEYVSQLRG 155          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CHLFF (30S ribosomal protein S5 OS=Chlamydophila felis (strain Fe/C-56) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K    AR+N++T+      + PH    D   A+++L+PA PGTG++AG  +R++LEMAG++N + K LGSNN +N  +A   A+  +   ++V + R +
Sbjct:   63 RKGGEAARKNLITIETLDGDSIPHEVLVDQDGAQLLLKPAKPGTGIVAGSRIRLILEMAGIKNIVAKSLGSNNPMNQVKAAFKALLSLSSRKDVLQRRRV 162          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CAMC59.578e-1546.0730S ribosomal protein S5 OS=Campylobacter curvus (... [more]
RS5_BUCCC9.578e-1541.4130S ribosomal protein S5 OS=Buchnera aphidicola su... [more]
RS5_YERE81.251e-1444.4430S ribosomal protein S5 OS=Yersinia enterocolitic... [more]
RS5_STRMK1.251e-1445.4530S ribosomal protein S5 OS=Stenotrophomonas malto... [more]
RS5_SODGM1.251e-1445.4530S ribosomal protein S5 OS=Sodalis glossinidius (... [more]
RS5_RALPJ1.251e-1446.4630S ribosomal protein S5 OS=Ralstonia pickettii (s... [more]
RS5_MYCPU1.251e-1438.0030S ribosomal protein S5 OS=Mycoplasma pulmonis GN... [more]
RS5_MYCPE1.251e-1440.8230S ribosomal protein S5 OS=Mycoplasma penetrans G... [more]
RS5_DESDG1.251e-1441.4130S ribosomal protein S5 OS=Desulfovibrio desulfur... [more]
RS5_CHLFF1.251e-1436.0030S ribosomal protein S5 OS=Chlamydophila felis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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