CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMC1 (30S ribosomal protein S5 OS=Campylobacter concisus (strain 13826) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.251e-14
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NI+ V + K  T PH  +  + A++++LRPAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAIDDAFKNIIHVKI-KGTTIPHDVEVKYNASRMLLRPASEGTGVIAGGSARPIIELAGIKDILTKSLGSNNSANVVRATIKALSLLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALTO (30S ribosomal protein S5 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 42/101 (41.58%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K   +A+++   VP     + PH   G+  A  V+L+PAS GTGVIAGG VR VLE AG+ + L K LGS+N +N   AT+ A++ ++    V+  RG+P+
Sbjct:   88 KGVEEAKKHFFKVPRIGQ-SIPHPVQGEDAAGVVLLKPASAGTGVIAGGPVRAVLECAGIHDVLSKSLGSSNPINIVHATLAALKGLESPEAVAARRGLPV 187          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOSK (30S ribosomal protein S5 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V +    T  H  +G  GA KV++R A PGTG+IAGG +R V EM G+++ + K LGS N  N  RAT+  +++    R+V++ RG
Sbjct:   72 RKATEQAKRQMIRVALRDGRTLHHDQEGRHGAGKVVMRAAVPGTGIIAGGPMRAVFEMLGIQDVVAKSLGSQNPYNMIRATMDGLKRESSPRQVAQRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOS4 (30S ribosomal protein S5 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V +    T  H  +G  GA KV++R A PGTG+IAGG +R V EM G+++ + K LGS N  N  RAT+  +++    R+V++ RG
Sbjct:   72 RKATEQAKRQMIRVALRDGRTLHHDQEGRHGAGKVVMRAAVPGTGIIAGGPMRAVFEMLGIQDVVAKSLGSQNPYNMIRATMDGLKRESSPRQVAQRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOS1 (30S ribosomal protein S5 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V +    T  H  +G  GA KV++R A PGTG+IAGG +R V EM G+++ + K LGS N  N  RAT+  +++    R+V++ RG
Sbjct:   72 RKATEQAKRQMIRVALRDGRTLHHDQEGRHGAGKVVMRAAVPGTGIIAGGPMRAVFEMLGIQDVVAKSLGSQNPYNMIRATMDGLKRESSPRQVAQRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PARL1 (30S ribosomal protein S5 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VP+ +  T  H  DG  GA +V+LR A PGTG+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++  +  R V+  RG
Sbjct:   68 RKATEAAKRAMIRVPLREGRTLHHDVDGRHGAGRVVLRAAPPGTGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKNEQSPRMVAARRG 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ONYPE (30S ribosomal protein S5 OS=Onion yellows phytoplasma GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGG-AVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+   A++ +V +P+T   T PH + G FGA+K  L+PAS GTG++AGG A R +LE+ G+ + L K  GS  ++N  RA +  +Q ++   EV++ RGI +
Sbjct:   65 KKALEKAKKQLVRIPITG-TTIPHDTIGRFGASKFFLKPASKGTGIVAGGKAARTILELVGINDVLTKTFGSRTSINVIRAVMDGLQSLRTKEEVAKLRGITL 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NITSB (30S ribosomal protein S5 OS=Nitratiruptor sp. (strain SB155-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 KSAVD-ARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 494
            K A+D A +NI TV + K  T  H  +  + A+K++L+PAS GTGVIAGGA R VLE+AG+++ L K LGSNN     RAT+ A++++K
Sbjct:   59 KKAIDNAFKNITTVNI-KGTTIAHDIEHKYNASKILLKPASQGTGVIAGGAARPVLELAGIQDILTKSLGSNNPATLVRATIEALERIK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATW (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATT (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CAMC11.251e-1446.0730S ribosomal protein S5 OS=Campylobacter concisus... [more]
RS5_SALTO1.634e-1441.5830S ribosomal protein S5 OS=Salinispora tropica (s... [more]
RS5_RHOSK1.634e-1439.3930S ribosomal protein S5 OS=Rhodobacter sphaeroide... [more]
RS5_RHOS41.634e-1439.3930S ribosomal protein S5 OS=Rhodobacter sphaeroide... [more]
RS5_RHOS11.634e-1439.3930S ribosomal protein S5 OS=Rhodobacter sphaeroide... [more]
RS5_PARL11.634e-1442.4230S ribosomal protein S5 OS=Parvibaculum lavamenti... [more]
RS5_ONYPE1.634e-1439.8130S ribosomal protein S5 OS=Onion yellows phytopla... [more]
RS5_NITSB1.634e-1449.4430S ribosomal protein S5 OS=Nitratiruptor sp. (str... [more]
RS5_FRATW1.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATT1.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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