CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATO (30S ribosomal protein S5 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATN (30S ribosomal protein S5 OS=Francisella tularensis subsp. novicida (strain U112) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATF (30S ribosomal protein S5 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRAT1 (30S ribosomal protein S5 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVMSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BUCBP (30S ribosomal protein S5 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpsE PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = -1
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            QK+   ARRN++ VP+    T  +   G +  + + ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT++ ++ MK    ++ +R
Sbjct:   62 QKAMEKARRNMIQVPLNNG-TLQYSVTGSYTGSYIFMKPASNGTGIIAGGAMRSVLEVAGVHNVLAKTYGSTNPINVVRATMLVLESMKSPEMIALKR 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BLOPB (30S ribosomal protein S5 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QKS   ARRN+V + + K  T  H   G +  +++ ++PAS GTG+IAG  +R +LE+ G+ N L K  GS N +N  RAT+ A+Q MK    ++ +RG
Sbjct:   61 QKSMEKARRNMVIISLYKG-TLQHAVKGVYTGSRIYMQPASEGTGIIAGTTMRAILEVVGIHNVLAKAYGSTNPINIVRATINALQSMKSPEMIAEKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BART1 (30S ribosomal protein S5 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R ++ VP+    T  H  +G  GA +V+LR AS GTG+IAGG +R + E  G+++ + K LGS+N  N  RAT  A++     R+++ +RGI
Sbjct:   66 RKATESAKRGMIYVPLRSGRTLHHDLEGRHGAGRVLLRSASAGTGIIAGGPMRAIFEALGMQDVVAKSLGSSNPYNMVRATFDALKHQMHPRDIAAQRGI 165          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHIDS (30S ribosomal protein S5 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RALEJ (30S ribosomal protein S5 OS=Ralstonia eutropha (strain JMP134) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V V + K  T  H   G  GAAKV++ PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  +QKM    E++ +RG
Sbjct:   67 QKAMDEARRKMVKVSL-KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPYNMVRATLDGLQKMSTPSEIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NITOC (30S ribosomal protein S5 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +AR+N+++VP+    T  H      GAAKV ++PAS GTG+IAGGA+R V E+ GV N L K +GS N +N  +ATV  + +M     ++ +RG
Sbjct:   63 QKAMENARKNMISVPLEGD-TLQHPITARHGAAKVHMQPASEGTGIIAGGAMRAVFEVVGVHNVLAKCIGSANPVNVVQATVKGLVQMSSPEAIAAKRG 160          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_FRATO1.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATN1.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRATF1.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_FRAT11.634e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_BUCBP1.634e-1441.8430S ribosomal protein S5 OS=Buchnera aphidicola su... [more]
RS5_BLOPB1.634e-1441.4130S ribosomal protein S5 OS=Blochmannia pennsylvan... [more]
RS5_BART11.634e-1439.0030S ribosomal protein S5 OS=Bartonella tribocorum ... [more]
RS5_SHIDS2.134e-1443.4330S ribosomal protein S5 OS=Shigella dysenteriae s... [more]
RS5_RALEJ2.134e-1445.4530S ribosomal protein S5 OS=Ralstonia eutropha (st... [more]
RS5_NITOC2.134e-1443.4330S ribosomal protein S5 OS=Nitrosococcus oceani (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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