CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_METFK (30S ribosomal protein S5 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR+++ V +    T  H   G  GAAKV ++PAS GTG+IAGGA+R + E+ GV N L K +GS N  N  RAT+  ++ M    E++ +RG
Sbjct:   64 QKAMDEARRSMIKVSLNNG-TLYHAVTGVHGAAKVFIQPASEGTGIIAGGAMRAIFEVMGVTNVLAKCIGSTNPYNVVRATLNGLKSMNTPAEIAAKRG 161          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GRABC (30S ribosomal protein S5 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R+++ VPM +  T  H   G FGA KV+LR A+ GTG+IAGG +R V E  G+ + + K LGS N  N  +AT  A+++    R V+  RG
Sbjct:   69 RKATERAKRSMIRVPMKEGRTLHHDVYGHFGAGKVVLRSATAGTGIIAGGPMRAVFESLGIGDVVAKSLGSRNPHNMVKATFAALERCSSPRSVASRRG 167          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ERWCT (30S ribosomal protein S5 OS=Erwinia carotovora subsp. atroseptica GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  +  MK    V+ +RG
Sbjct:   61 QKAMEKARRNMMNVALNNG-TLQHPVKGAHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLANMKSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ENT38 (30S ribosomal protein S5 OS=Enterobacter sp. (strain 638) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +  + T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALN-HGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DEIGD (30S ribosomal protein S5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   AR+N++TVP+    T PH   G+   ++V+L+PA PGTGVIAG   R + E+AG+ N L K+LGS N +N A A    ++ ++  ++V   RG+
Sbjct:   66 EKAKAIARKNMITVPVENG-TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELGSRNKINVAYAVFDGLKNLRTAKQVREIRGL 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V V +    T PH   G FG   V++ PA+ GTGVIAGG  R VLE+AG+++   K LGSNN  N  +AT+  +  ++   ++++ RG
Sbjct:   60 RKGIEDAKKNLVEVSIVG-TTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPRNMVKATINGLANLRTAEDIAKLRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V V +    T PH   G FG   V++ PA+ GTGVIAGG  R VLE+AG+++   K LGSNN  N  +AT+  +  ++   ++++ RG
Sbjct:   60 RKGIEDAKKNLVEVSIVG-TTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPRNMVKATINGLANLRTAEDIAKLRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N+V V +    T PH   G FG   V++ PA+ GTGVIAGG  R VLE+AG+++   K LGSNN  N  +AT+  +  ++   ++++ RG
Sbjct:   60 RKGIEDAKKNLVEVSIVG-TTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPRNMVKATINGLANLRTAEDIAKLRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ARCB4 (30S ribosomal protein S5 OS=Arcobacter butzleri (strain RM4018) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +++VTV + K  T  H  +  + A+K++LRPAS GTG+IAGGA R VLE++GV++ + K LGSNN  N  +ATV A+ K+K
Sbjct:   58 KKALDDAFKSLVTVSI-KGTTIAHDIEHKYNASKILLRPASEGTGLIAGGAARPVLELSGVKDIIAKSLGSNNPNNLVQATVEALAKIK 145          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_WOLSU (30S ribosomal protein S5 OS=Wolinella succinogenes GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NI+ V + K  T  H  +  + A+K++L+PAS GTGVIAGG+ R V+E+AG+++ L K LGSNN  N  RAT+ A+ ++K
Sbjct:   58 KKAVDDAFKNIIKVNV-KGTTIAHDIEHKYNASKILLKPASEGTGVIAGGSARPVIELAGIKDILTKSLGSNNPYNVVRATIDALSRIK 145          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_METFK2.134e-1443.4330S ribosomal protein S5 OS=Methylobacillus flagel... [more]
RS5_GRABC2.134e-1441.4130S ribosomal protein S5 OS=Granulibacter bethesde... [more]
RS5_ERWCT2.134e-1444.4430S ribosomal protein S5 OS=Erwinia carotovora sub... [more]
RS5_ENT382.134e-1443.4330S ribosomal protein S5 OS=Enterobacter sp. (stra... [more]
RS5_DEIGD2.134e-1440.0030S ribosomal protein S5 OS=Deinococcus geothermal... [more]
RS5_CLOPS2.134e-1440.4030S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOPE2.134e-1440.4030S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOP12.134e-1440.4030S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_ARCB42.134e-1448.3130S ribosomal protein S5 OS=Arcobacter butzleri (s... [more]
RS5_WOLSU2.787e-1446.0730S ribosomal protein S5 OS=Wolinella succinogenes... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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