CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHISS (30S ribosomal protein S5 OS=Shigella sonnei (strain Ss046) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHIFL (30S ribosomal protein S5 OS=Shigella flexneri GN=rpsE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHIF8 (30S ribosomal protein S5 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SHIBS (30S ribosomal protein S5 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALTY (30S ribosomal protein S5 OS=Salmonella typhimurium GN=rpsE PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALTI (30S ribosomal protein S5 OS=Salmonella typhi GN=rpsE PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALPB (30S ribosomal protein S5 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALPA (30S ribosomal protein S5 OS=Salmonella paratyphi A GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALCH (30S ribosomal protein S5 OS=Salmonella choleraesuis GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALAR (30S ribosomal protein S5 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_SHISS2.787e-1443.4330S ribosomal protein S5 OS=Shigella sonnei (strai... [more]
RS5_SHIFL2.787e-1443.4330S ribosomal protein S5 OS=Shigella flexneri GN=r... [more]
RS5_SHIF82.787e-1443.4330S ribosomal protein S5 OS=Shigella flexneri sero... [more]
RS5_SHIBS2.787e-1443.4330S ribosomal protein S5 OS=Shigella boydii seroty... [more]
RS5_SALTY2.787e-1443.4330S ribosomal protein S5 OS=Salmonella typhimurium... [more]
RS5_SALTI2.787e-1443.4330S ribosomal protein S5 OS=Salmonella typhi GN=rp... [more]
RS5_SALPB2.787e-1443.4330S ribosomal protein S5 OS=Salmonella paratyphi B... [more]
RS5_SALPA2.787e-1443.4330S ribosomal protein S5 OS=Salmonella paratyphi A... [more]
RS5_SALCH2.787e-1443.4330S ribosomal protein S5 OS=Salmonella choleraesui... [more]
RS5_SALAR2.787e-1443.4330S ribosomal protein S5 OS=Salmonella arizonae (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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