CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RUBXD (30S ribosomal protein S5 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    AR  +  VPM +  T PH   G++ +++V+L+PAS GTGVIAGG VR VLE+AG+++ L K LGS   +N  RAT   +++++   ++ + RG+
Sbjct:   99 KGQEKARHAMFDVPM-RNTTIPHEVVGEYESSRVLLKPASEGTGVIAGGGVRAVLELAGIKDVLTKALGSTTPVNLVRATEDGLRQLRTKAQIEQIRGV 196          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHOS5 (30S ribosomal protein S5 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V +    T  H  +G  GA KV++R A PGTG+IAGG +R V EM G+++ + K +GS N  N  RAT+  +++    R+V++ RG
Sbjct:   72 RKATEQAKRQMIRVALRDGRTLHHDQEGRHGAGKVVMRAAVPGTGIIAGGPMRAVFEMLGIQDVVAKSMGSQNPYNMIRATMDGLKRESSPRQVAQRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RALEH (30S ribosomal protein S5 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/99 (45.45%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V V + K  T  H   G  GAAKV++ PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  +QKM    E++ +RG
Sbjct:   67 QKAMDEARRKMVKVSL-KNGTLQHEVVGKHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPYNMVRATLDGLQKMSTPGEIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEE4 (30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + K  T  + +    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NITMU (30S ribosomal protein S5 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR ++ V + K  T  H   G  GAAKV ++PAS GTG+IAGG +R + E+ GV N L K +GS N  N  RAT+  +Q M    E++ +RG
Sbjct:   72 QKAMDEARRKMIKVSL-KNGTLQHPVIGRHGAAKVYMQPASEGTGIIAGGPMRAIFEVMGVHNILAKCIGSTNPYNVVRATLNGLQAMSNPAEIAAKRG 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_METPP (30S ribosomal protein S5 OS=Methylibium petroleiphilum (strain PM1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = -1
Query:  201 ARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 479
            ARR++V V + K  T  H   G+ GAAKV+L PA+PGTG+IAGG +R V E+ GV + + K LGS+N  N  RAT  A+++     EV+ +RG
Sbjct:   73 ARRDMVKVSL-KNGTVHHNVTGEHGAAKVLLAPAAPGTGIIAGGPMRAVFEVMGVTDIVAKSLGSSNPYNMVRATFNALRRSTTPSEVASKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_METCA (30S ribosomal protein S5 OS=Methylococcus capsulatus GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QKS   AR+N+  V +    T  H      GAAKV ++PAS GTG+IAGGA+R V E+ GV N L K +G+NN +N  RAT+  +  ++  + V+ +RG+
Sbjct:   64 QKSMEQARKNMRKVALNGQ-TLHHPVTAAAGAAKVHMQPASEGTGIIAGGAMRAVFEVVGVHNVLAKCIGTNNPINVVRATIKGLTALRDPKSVAAKRGM 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_LACC3 (30S ribosomal protein S5 OS=Lactobacillus casei (strain ATCC 334) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 KSAVDA-RRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            + AVDA +++++ VP+    T PH   G FGA +V+L+PA  G+GV AGGA+R V+E+AG+ +   K LG N  +N  RAT+  + +++   +V+  RG+
Sbjct:   62 RKAVDAAKKSLIEVPIVG-TTIPHEVIGHFGAGEVLLKPAEEGSGVAAGGAIRSVMELAGIADITSKSLGRNTPINMIRATMDGLTQLRTREQVAELRGV 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_FRATH (30S ribosomal protein S5 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 44/101 (43.56%), Postives = 65/101 (64.36%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTK-YLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            QK+  +A++N+V+V +    L +P  S+   GA+KV ++PAS GTG+IAGGA+R V E  GV N L K  GS N  N  RAT+  + K+K   E++ +RG+
Sbjct:   61 QKAMENAKKNMVSVNLNNDTLWYPVVSN--HGASKVFMQPASAGTGIIAGGAMRSVFEAVGVHNVLAKTYGSTNPANVVRATIAGLAKIKSPDEIAEKRGL 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ECOUT (30S ribosomal protein S5 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  H   G    ++V ++PAS GTG+IAGGA+R VLE+AGV N L K  GS N +N  RAT+  ++ M     V+ +RG
Sbjct:   61 QKAMEKARRNMINVALNNG-TLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRG 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_RUBXD2.787e-1441.4130S ribosomal protein S5 OS=Rubrobacter xylanophil... [more]
RS5_RHOS52.787e-1438.3830S ribosomal protein S5 OS=Rhodobacter sphaeroide... [more]
RS5_RALEH2.787e-1445.4530S ribosomal protein S5 OS=Ralstonia eutropha (st... [more]
RS5_PSEE42.787e-1443.4330S ribosomal protein S5 OS=Pseudomonas entomophil... [more]
RS5_NITMU2.787e-1444.4430S ribosomal protein S5 OS=Nitrosospira multiform... [more]
RS5_METPP2.787e-1447.3130S ribosomal protein S5 OS=Methylibium petroleiph... [more]
RS5_METCA2.787e-1443.0030S ribosomal protein S5 OS=Methylococcus capsulat... [more]
RS5_LACC32.787e-1440.0030S ribosomal protein S5 OS=Lactobacillus casei (s... [more]
RS5_FRATH2.787e-1443.5630S ribosomal protein S5 OS=Francisella tularensis... [more]
RS5_ECOUT2.787e-1443.4330S ribosomal protein S5 OS=Escherichia coli (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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