CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMJR (30S ribosomal protein S5 OS=Campylobacter jejuni (strain RM1221) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NIV V  TK  T  H  +  + A++++L+PAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAVDDAFKNIVEVK-TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMJJ (30S ribosomal protein S5 OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NIV V  TK  T  H  +  + A++++L+PAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAVDDAFKNIVEVK-TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMJE (30S ribosomal protein S5 OS=Campylobacter jejuni GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NIV V  TK  T  H  +  + A++++L+PAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAVDDAFKNIVEVK-TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMJD (30S ribosomal protein S5 OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NIV V  TK  T  H  +  + A++++L+PAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAVDDAFKNIVEVK-TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMJ8 (30S ribosomal protein S5 OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NIV V  TK  T  H  +  + A++++L+PAS GTGVIAGG+ R ++E+AG+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   59 RKAVDDAFKNIVEVK-TKGSTIAHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLK 146          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THELT (30S ribosomal protein S5 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   AR ++V +P+ K  T PH   G   A+KV+LRPA+PGTG+IAG  VR V+E+AGV+N L K LGS  ++N A AT+  ++ +    + ++ R I
Sbjct:   67 RKAIAAARASVVEIPLYK-TTIPHEVFGRQDASKVLLRPAAPGTGIIAGSTVRAVVELAGVQNVLTKCLGSTASVNLALATLNGLKDLVSPEKAAKLRDI 165          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SOLUE (30S ribosomal protein S5 OS=Solibacter usitatus (strain Ellin6076) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  198 TFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 437
            T PH+  G F +++V+L+PASPGTGVIAGGAVR V+   GV N L K +G  N  N  +AT+VA++ ++    V+  RG+
Sbjct:   85 TIPHQVLGVFASSQVLLKPASPGTGVIAGGAVRAVITACGVPNVLTKSIGRRNPHNVVKATIVALEMLRDRNTVAEMRGL 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEPW (30S ribosomal protein S5 OS=Pseudomonas putida (strain W619) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + K  T  + +    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEPK (30S ribosomal protein S5 OS=Pseudomonas putida (strain KT2440) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + K  T  + +    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEPG (30S ribosomal protein S5 OS=Pseudomonas putida (strain GB-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + K  T  + +    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRG 159          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CAMJR3.639e-1446.0730S ribosomal protein S5 OS=Campylobacter jejuni (... [more]
RS5_CAMJJ3.639e-1446.0730S ribosomal protein S5 OS=Campylobacter jejuni s... [more]
RS5_CAMJE3.639e-1446.0730S ribosomal protein S5 OS=Campylobacter jejuni G... [more]
RS5_CAMJD3.639e-1446.0730S ribosomal protein S5 OS=Campylobacter jejuni s... [more]
RS5_CAMJ83.639e-1446.0730S ribosomal protein S5 OS=Campylobacter jejuni s... [more]
RS5_THELT4.753e-1443.0030S ribosomal protein S5 OS=Thermotoga lettingae (... [more]
RS5_SOLUE4.753e-1447.5030S ribosomal protein S5 OS=Solibacter usitatus (s... [more]
RS5_PSEPW4.753e-1443.4330S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEPK4.753e-1443.4330S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PSEPG4.753e-1443.4330S ribosomal protein S5 OS=Pseudomonas putida (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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