CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEP1 (30S ribosomal protein S5 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V + K  T  + +    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDL-KGTTLQYATKAAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVYATFKGLKAMQSPESIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PHYAS (30S ribosomal protein S5 OS=Phytoplasma australiense GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGG-AVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+   A++ ++ +P+    T PH + G FGA+K +LRPAS GTG++AGG A R VLE+ G+ + L K  GS  ++N  RA +  ++ ++   EV++ RG+ +
Sbjct:   65 KKAVEKAKKQLIRIPIVG-TTIPHDTIGHFGASKFLLRPASKGTGIVAGGAAARTVLELVGISDVLTKTFGSRTSINVIRAVMDGLKNLRTKEEVAKLRGLTL 166          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GLUOX (30S ribosomal protein S5 OS=Gluconobacter oxydans GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VPM +  T  H + G +GA KV++R A  GTG+IAGG +R V E  GV + + K LG+ N  N  +AT  A++K    R V+  RG
Sbjct:   71 RKATERAKRTMIRVPMKEGRTLHHDTFGHYGAGKVVVRAAEAGTGIIAGGPMRAVFESLGVNDVVAKSLGTRNPHNMIKATFAALEKASSPRHVASRRG 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CAMHC (30S ribosomal protein S5 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NI+ V +    T  H  +  + A+K++L+PAS GTGVIAGG+VR VLE+ G+++ L K LGSNN+ N  RAT+ A+  +K
Sbjct:   58 KKAVDDAFKNIIDVKLNGS-TIAHDIEVKYNASKILLKPASEGTGVIAGGSVRPVLELVGIKDILTKSLGSNNSSNVVRATIKALSMLK 145          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BARQU (30S ribosomal protein S5 OS=Bartonella quintana GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R ++ VP+    T  H  +G  GA +V+LR AS GTG+IAGG +R + E  G+++ + K LGS+N  N  RAT  A++     R+++ +RGI
Sbjct:   66 RKATEAAKRGMIYVPLRSGRTLHHDLEGRHGAGRVLLRSASAGTGIIAGGPMRAIFETLGMQDVVAKSLGSSNPYNMVRATFDALKHQMHPRDIAVQRGI 165          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIBY (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain AYE) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIBT (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rpsE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   62 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIBS (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain SDF) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIBC (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain ACICU) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 157          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ACIB5 (30S ribosomal protein S5 OS=Acinetobacter baumannii (strain AB0057) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  201 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 494
            K+   ARRN++TV +    T  H  +   GA++V ++PAS GTGVIAGGA+R VLE AGV N L K  GS NA N   AT   ++ M    +V+ +RG
Sbjct:   61 KALEAARRNMITVDLAG-TTLQHPVNARHGASRVYMQPASEGTGVIAGGAMRAVLEAAGVHNVLAKCYGSTNAANVVNATFKGLRDMTSPEKVAAKRG 157          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_PSEP14.753e-1443.4330S ribosomal protein S5 OS=Pseudomonas putida (st... [more]
RS5_PHYAS4.753e-1437.8630S ribosomal protein S5 OS=Phytoplasma australien... [more]
RS5_GLUOX4.753e-1440.4030S ribosomal protein S5 OS=Gluconobacter oxydans ... [more]
RS5_CAMHC4.753e-1446.0730S ribosomal protein S5 OS=Campylobacter hominis ... [more]
RS5_BARQU4.753e-1439.0030S ribosomal protein S5 OS=Bartonella quintana GN... [more]
RS5_ACIBY4.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]
RS5_ACIBT4.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]
RS5_ACIBS4.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]
RS5_ACIBC4.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]
RS5_ACIB54.753e-1445.9230S ribosomal protein S5 OS=Acinetobacter baumanni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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