CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ERYLH (30S ribosomal protein S5 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   AR+ ++ V + +  T  H  +G FGA KV +R A PGTG+IAGG +R V E  GV + + K +G++N  N  RAT  A+Q     + V++ RG
Sbjct:  160 QKATAAARKKMIRVALKEGRTLHHDGNGRFGAGKVTVRTAPPGTGIIAGGPMRAVFESLGVADVVTKSVGTSNPYNMIRATFDALQDQTSPKSVAQRRG 258          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_DEIRA (30S ribosomal protein S5 OS=Deinococcus radiodurans GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   AR+N++TVP+    T PH   G+   ++V+L+PA PGTGVIAG   R + E+AG+ N L K+LGS N +N A A     + ++  ++V   RG
Sbjct:   67 EKAKAVARKNMITVPVENG-TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELGSRNKVNVAYAVFDGFKNLRTAKQVRNLRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_AYWBP (30S ribosomal protein S5 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.108e-14
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGG-AVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A++ +V +P+    T PH + G FGA+K  L+PAS GTG++AGG A R +LE+ G+ + L K  GS  ++N  RA +  +Q ++   EV++ RGI
Sbjct:   79 KKALEKAKKQLVRIPIVG-TTIPHDTIGRFGASKFFLKPASKGTGIVAGGKAARTILELVGINDVLTKTFGSRTSINVIRAVMDGLQSLRTKEEVAKLRGI 178          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEM4 (30S ribosomal protein S5 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   ARRN+  VP+    T PH   G   AAKV+L+PASPGTG+I+ G VR V+E+AG+ N L K  GS N +  A+ATV  ++ +    +++  R I
Sbjct:   65 RKALSAARRNVFKVPIHNG-TIPHEIVGRQDAAKVLLKPASPGTGIISNGTVRAVVELAGIHNILTKSSGSTNPVVLAQATVNGLKNLLSLEKIAELRDI 163          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ROSDO (30S ribosomal protein S5 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ V + +  T  H  +G  GA KV++R A  GTG+IAGG +R V EM GV++ + K +GS N  N  RAT+  ++K    R V++ RG
Sbjct:   71 RKATEQAKRQMIRVQLREGRTLHHDMEGRHGAGKVVMRSAPEGTGIIAGGPMRAVFEMLGVKDVVSKSIGSQNPYNMIRATMDGLRKESSPRSVAQRRG 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEMY (30S ribosomal protein S5 OS=Pseudomonas mendocina (strain ymp) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMT-KYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    L +P +S    GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    V+ +RG
Sbjct:   62 QKAMEAARRNMIQVDLNGTTLQYPIKSA--HGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKTMQSPESVAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_HELHP (30S ribosomal protein S5 OS=Helicobacter hepaticus GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 40/89 (44.94%), Postives = 62/89 (69.66%), Query Frame = -1
Query:  231 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 497
            +K+  DA +NI+ V + K  T  H  +  + A++++L+PAS GTGVIAGG+ R V+E+AG+++ L K LGSNN  N  RAT+ A+ ++K
Sbjct:   58 KKAIDDAFKNIIKVNI-KGTTIAHDIEHKYNASRILLKPASEGTGVIAGGSTRPVIELAGIKDILTKSLGSNNPYNVVRATIDALARIK 145          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GLUDA (30S ribosomal protein S5 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+   A+R ++ VPM +  T  H   G FGA KV+LR A  GTG+IAGG +R V E  G+ + + K LG+ N  N  +AT  A+++    R V+  RG
Sbjct:   72 RKATDRAKRAMIRVPMKEGRTLHHDVAGHFGAGKVVLRSADAGTGIIAGGPMRAVFESLGINDVVAKSLGTRNPHNMVKATFAALERCASPRTVANRRG 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XYLFT (30S ribosomal protein S5 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            ++++EK+ DG  E                Q  F A+                       +QKS   AR+ +  V +    T  H    + GAA V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  ++ M+    ++ +RG
Sbjct:   12 RSREEKIDDGMIEKLVAVNRVSKTVKGGRQFTFTALTIVGNGEGSVGFGYGKAREVPVAIQKSMEYARKRMSNVSLNNG-TLWHPVKANHGAASVFMKPASEGTGVIAGGAMRAVLEAVGVKNVLAKAIGSRNPINLVRATLKGLEDMQSPTHIALKRG 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_XYLF2 (30S ribosomal protein S5 OS=Xylella fastidiosa (strain M23) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = -1
Query:  201 KTKKEKVKDGFEEXXXXXXXXXXXXXXXXQLKFRAIXXXXXXXXXXXXXXXXXXXXXXXVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 677
            ++++EK+ DG  E                Q  F A+                       +QKS   AR+ +  V +    T  H    + GAA V ++PAS GTGVIAGGA+R VLE  GV+N L K +GS N +N  RAT+  ++ M+    ++ +RG
Sbjct:   12 RSREEKIDDGMIEKLVAVNRVSKTVKGGRQFTFTALTIVGNGEGSVGFGYGKAREVPVAIQKSMEYARKRMSNVSLNNG-TLWHPVKANHGAASVFMKPASEGTGVIAGGAMRAVLEAVGVKNVLAKAIGSRNPINLVRATLKGLEDMQSPTHIALKRG 169          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_ERYLH8.108e-1440.4030S ribosomal protein S5 OS=Erythrobacter litorali... [more]
RS5_DEIRA8.108e-1440.4030S ribosomal protein S5 OS=Deinococcus radioduran... [more]
RS5_AYWBP8.108e-1439.6030S ribosomal protein S5 OS=Aster yellows witches'... [more]
RS5_THEM41.059e-1343.0030S ribosomal protein S5 OS=Thermosipho melanesien... [more]
RS5_ROSDO1.059e-1339.3930S ribosomal protein S5 OS=Roseobacter denitrific... [more]
RS5_PSEMY1.059e-1345.0030S ribosomal protein S5 OS=Pseudomonas mendocina ... [more]
RS5_HELHP1.059e-1344.9430S ribosomal protein S5 OS=Helicobacter hepaticus... [more]
RS5_GLUDA1.059e-1340.4030S ribosomal protein S5 OS=Gluconacetobacter diaz... [more]
RS5_XYLFT1.383e-1332.0830S ribosomal protein S5 OS=Xylella fastidiosa (st... [more]
RS5_XYLF21.383e-1332.0830S ribosomal protein S5 OS=Xylella fastidiosa (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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