CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RHILO (30S ribosomal protein S5 OS=Rhizobium loti GN=rpsE PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G +GA +V+LR A  GTG+IAGG +R V E  G+ + + K +GS+N  N  RAT  A++     ++V+  RGI
Sbjct:   71 RKATESAKRDMIFVPLRSGRTLHHDVEGRWGAGRVLLRAAKQGTGIIAGGPMRAVFETLGMHDVVAKSMGSSNPYNMVRATFDALKSQMHPKDVAAARGI 170          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_RALME (30S ribosomal protein S5 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+  +ARR +V V + K  T  H   G  GAAKV++ PA  GTGVIAGG +R + E+ GV N + K  GS N  N  RAT+  + KM    E++ +RG
Sbjct:   67 QKAMDEARRKMVKVAL-KNGTLQHEVVGRHGAAKVLMMPAKEGTGVIAGGPMRAIFEVMGVTNVVTKSHGSTNPYNMVRATLDGLTKMSTPAEIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PSEF5 (30S ribosomal protein S5 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN++ V +    T  +      GA+KV ++PAS GTG+IAGGA+R VLE+AGV+N L K  GS N +N   AT   ++ M+    ++ +RG
Sbjct:   62 QKAMEAARRNMIQVDLNG-TTLQYAMKSAHGASKVYMQPASEGTGIIAGGAMRAVLEVAGVQNVLAKCYGSTNPVNVVHATFKGLKAMQSPESIAAKRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_PORGI (30S ribosomal protein S5 OS=Porphyromonas gingivalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  198 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 494
            K    A++N++ VP+    T PH     +G A V L+PA+ GTGV AGGA+R VL+  GV + L K  GS+N  N  +AT+ A+ +M+    V++ RGI
Sbjct:   67 KGVEAAKKNLIRVPVHNG-TIPHEQAASYGGASVFLKPATTGTGVKAGGAMRAVLDSVGVTDVLAKSKGSSNPHNLVKATIQALAEMRSPLMVAQNRGI 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_OCHA4 (30S ribosomal protein S5 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  198 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGI 497
            +K+   A+R+++ VP+    T  H  +G  GA KV+LR A  G G+IAGG +R V E  GV++ + K LGS+N  N  RAT  A++     ++++ +RGI
Sbjct:   70 RKATEAAKRDMIFVPLRSGRTLHHDVEGRHGAGKVLLRAAPAGKGIIAGGPMRAVFETLGVQDVVAKSLGSSNPYNMVRATFDALKHQMHPKDIAAQRGI 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURVG (30S ribosomal protein S5 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURS3 (30S ribosomal protein S5 OS=Burkholderia sp. (strain 383) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURPS (30S ribosomal protein S5 OS=Burkholderia pseudomallei GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURP8 (30S ribosomal protein S5 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURP6 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 668) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_RHILO1.383e-1338.0030S ribosomal protein S5 OS=Rhizobium loti GN=rpsE... [more]
RS5_RALME1.383e-1344.4430S ribosomal protein S5 OS=Ralstonia metalliduran... [more]
RS5_PSEF51.383e-1342.4230S ribosomal protein S5 OS=Pseudomonas fluorescen... [more]
RS5_PORGI1.383e-1341.4130S ribosomal protein S5 OS=Porphyromonas gingival... [more]
RS5_OCHA41.383e-1339.0030S ribosomal protein S5 OS=Ochrobactrum anthropi ... [more]
RS5_BURVG1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia vietnamie... [more]
RS5_BURS31.383e-1342.4230S ribosomal protein S5 OS=Burkholderia sp. (stra... [more]
RS5_BURPS1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURP81.383e-1342.4230S ribosomal protein S5 OS=Burkholderia phymatum ... [more]
RS5_BURP61.383e-1342.4230S ribosomal protein S5 OS=Burkholderia pseudomal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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