CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURP1 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURP0 (30S ribosomal protein S5 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURMS (30S ribosomal protein S5 OS=Burkholderia mallei (strain SAVP1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURMA (30S ribosomal protein S5 OS=Burkholderia mallei GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURM9 (30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURM7 (30S ribosomal protein S5 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURM1 (30S ribosomal protein S5 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASTVLLAPAKDGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURCM (30S ribosomal protein S5 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURCJ (30S ribosomal protein S5 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BURCH (30S ribosomal protein S5 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            QK+   ARRN+  VP+ K  T  H   G  GA+ V+L PA  GTGVIAGG +R V ++ GV+N + K  GS N  N  RAT+  ++K     +++ +RG
Sbjct:   67 QKAMEQARRNMFKVPL-KNGTLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPYNLVRATLDGLRKQSTPADIAAKRG 164
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_BURP11.383e-1342.4230S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURP01.383e-1342.4230S ribosomal protein S5 OS=Burkholderia pseudomal... [more]
RS5_BURMS1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURMA1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia mallei GN... [more]
RS5_BURM91.383e-1342.4230S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURM71.383e-1342.4230S ribosomal protein S5 OS=Burkholderia mallei (s... [more]
RS5_BURM11.383e-1342.4230S ribosomal protein S5 OS=Burkholderia multivora... [more]
RS5_BURCM1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia ambifaria... [more]
RS5_BURCJ1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia cepacia (... [more]
RS5_BURCH1.383e-1342.4230S ribosomal protein S5 OS=Burkholderia cenocepac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
back to top