CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CALS8 (30S ribosomal protein S5 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 48/99 (48.48%), Postives = 72/99 (72.73%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA+++++ VP+    T PH + GDFGA+KV+++PA  GTGVIAGGAVR V E+AG+++   K LGSNN  N   AT+ A++++K+  EV+R RG
Sbjct:   63 RKAIEDAKKHLIEVPIVG-TTIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNPANVVHATIEALKQLKKPEEVARLRG 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACLD (30S ribosomal protein S5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsE PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VPM    T PH   G FGA  ++L+PAS GTGVIAGG VR VLE+AGV + L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   63 RKAVEDAKKNLIEVPMVG-TTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVSDILSKSLGSNTPINMIRATVQGLSELKRAEDVAKLRG 160
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_CLOTH (30S ribosomal protein S5 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = -1 
Query:  204 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 497
            +K   DA++N++ VP+    T PH   G+FGA KV+L+PA PGTGVIAGG VR VLE+AG+++   K LGSNN +N   AT+  + ++K   EV++ R
Sbjct:   61 RKGIEDAKKNLIKVPIVN-TTIPHEVIGEFGAGKVLLKPAQPGTGVIAGGPVRAVLELAGIKDIRTKSLGSNNPINMVHATIEGLSRLKTAEEVAKLR 157
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACCR (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   62 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACC1 (30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 10987) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACAN (30S ribosomal protein S5 OS=Bacillus anthracis GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   61 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 158
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACAH (30S ribosomal protein S5 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH  +G FGA +V L+PA+ GTGVIAGG VR VLE+AGV++ L K LGSN  +N  RATV  + ++K+  +V++ RG
Sbjct:   62 RKAIEDAKKNLIAVPLVG-TTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLGSNTPINMIRATVNGLSELKRAEDVAKLRG 159
[Close]
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACA2 (30S ribosomal protein S5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = -1 
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VPM    T PH   G FGA  ++L+PAS GTGVIAGG VR VLE+AGV + L K LGSN  +N  RAT+  + ++K+  EV++ RG
Sbjct:   63 RKAVEDAKKNLIEVPMVG-TTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEEVAKLRG 160
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_CALS81.291e-1948.4830S ribosomal protein S5 OS=Caldicellulosiruptor s... [more]
RS5_BACLD1.291e-1949.4930S ribosomal protein S5 OS=Bacillus licheniformis... [more]
RS5_CLOTH1.687e-1947.9630S ribosomal protein S5 OS=Clostridium thermocell... [more]
RS5_BACHK1.687e-1948.4830S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_BACCZ1.687e-1948.4830S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACCR1.687e-1948.4830S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACC11.687e-1948.4830S ribosomal protein S5 OS=Bacillus cereus (strai... [more]
RS5_BACAN1.687e-1948.4830S ribosomal protein S5 OS=Bacillus anthracis GN=... [more]
RS5_BACAH1.687e-1948.4830S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_BACA21.687e-1949.4930S ribosomal protein S5 OS=Bacillus amyloliquefac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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