CX674593

Overview
NameCX674593
Unique NameCX674593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_NOCFA (30S ribosomal protein S5 OS=Nocardia farcinica GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            QK   +AR+    VPM    T  H   G+  A  VMLRPASPGTGVIAGGA R VLE AG+ + L K LGS+NA+N   ATV A++++++  EV+  RG+P+
Sbjct:   98 QKGVEEARKGFFRVPMIGS-TITHPVQGEAAAGVVMLRPASPGTGVIAGGAARAVLECAGIHDILAKSLGSDNAINVVHATVAALKQLQRPEEVAARRGLPL 198          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANOFW (30S ribosomal protein S5 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 46/99 (46.46%), Postives = 70/99 (70.71%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++TVP+    T PH   G FGA +++L+PAS GTGVIAGG  R VLE+AG+ + L K +GSN  +N  RAT+  ++++K+  EV++ RG
Sbjct:   61 RKAIEDAKKNLITVPIVG-TTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATIDGLKQLKRAEEVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SALRD (30S ribosomal protein S5 OS=Salinibacter ruber (strain DSM 13855) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = -1
Query:  192 KSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 494
            K A DA++N++ VPM    T PH+  G   A KV+L+PASPGTGVIAGG VR VLE AG  N L K LG++N  N  +AT+ A+ + +   EV+R R IP+
Sbjct:   70 KGADDAKKNVIRVPMRDG-TIPHKVVGKQDAGKVLLKPASPGTGVIAGGGVRAVLECAGYRNVLTKSLGTSNPHNQVKATINALAETEDALEVARRRDIPL 169          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 47/99 (47.47%), Postives = 69/99 (69.70%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VP+    T PH   G FGA K++L+PAS GTGVIAGG  R VLE+AG+ + L K +GSN  +N  RATV  ++++K+  +V+R RG
Sbjct:   61 RKAIEDAKKNLIEVPIVG-TTIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATVDGLKQLKRAEDVARLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_ANATD (30S ribosomal protein S5 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 47/99 (47.47%), Postives = 72/99 (72.73%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA+++++ VP+    T PH + GDFGA+KV+++PA  GTGVIAGGAVR V E+AG+++   K LGSNN  N   AT+ A++++++  EV+R RG
Sbjct:   63 RKAIEDAKKHLIEVPIVG-TTIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNPANVVHATIEALKQLRRPEEVARIRG 160          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEPX (30S ribosomal protein S5 OS=Thermoanaerobacter sp. (strain X514) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 47/102 (46.08%), Postives = 72/102 (70.59%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+  DA+++++ VP+    T PH   G+FGA KV+L+PA  GTGVIAGG VR VLE AG+++ L K LGS+NA N   AT+  +++++   +V++ RGIP+
Sbjct:   62 RKAIEDAKKHLIKVPIVG-TTIPHEVIGEFGAGKVLLKPAREGTGVIAGGPVRAVLESAGIKDVLTKSLGSSNATNMVYATIEGLKRLRTAEDVAKLRGIPV 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_THEP3 (30S ribosomal protein S5 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 47/102 (46.08%), Postives = 72/102 (70.59%), Query Frame = -1
Query:  192 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPM 497
            +K+  DA+++++ VP+    T PH   G+FGA KV+L+PA  GTGVIAGG VR VLE AG+++ L K LGS+NA N   AT+  +++++   +V++ RGIP+
Sbjct:   62 RKAIEDAKKHLIKVPIVG-TTIPHEVIGEFGAGKVLLKPAREGTGVIAGGPVRAVLESAGIKDVLTKSLGSSNATNMVYATIEGLKRLRTAEDVAKLRGIPV 162          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_SYNWW (30S ribosomal protein S5 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsE PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 47/99 (47.47%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  +A++N+++VP+    T PH   G FGA +V+L+PAS GTGVIAGG VR VLE AG+++ L K LGS+NA N   AT+  ++ +K+  +V+R+RG
Sbjct:   61 RKAIENAKKNMLSVPLIDGRTIPHEILGIFGAGQVLLKPASEGTGVIAGGPVRAVLEAAGIKDILTKSLGSDNATNIVHATMEGLRSLKRVEDVARQRG 159          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_BACSU (30S ribosomal protein S5 OS=Bacillus subtilis GN=rpsE PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K+  DA++N++ VPM    T PH   G FGA  ++L+PAS GTGVIAGG VR VLE+AGV + L K LGSN  +N  RAT+  + ++K+  +V++ RG
Sbjct:   61 RKAVEDAKKNLIEVPMVG-TTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRG 158          
BLAST of CX674593 vs. ExPASy Swiss-Prot
Match: RS5_MOOTA (30S ribosomal protein S5 OS=Moorella thermoacetica (strain ATCC 39073) GN=rpsE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.409e-19
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = -1
Query:  201 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 497
            +K   DA++N++ VPM    T PH   G FGA KV+L+PA+PGTGVIAGG VR VLE AG+ + L K LGS N  N   AT+  ++ +K+  EV+R RG
Sbjct:   61 RKGIEDAKKNLIKVPMVG-TTIPHEIIGHFGAGKVLLKPAAPGTGVIAGGPVRAVLEAAGIRDILTKSLGSANPNNAVYATIEGLKGLKRAEEVARLRG 158          
The following BLAST results are available for this feature:
BLAST of CX674593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_NOCFA2.203e-1950.0030S ribosomal protein S5 OS=Nocardia farcinica GN=... [more]
RS5_ANOFW2.203e-1946.4630S ribosomal protein S5 OS=Anoxybacillus flavithe... [more]
RS5_SALRD2.877e-1950.5030S ribosomal protein S5 OS=Salinibacter ruber (st... [more]
RS5_GEOSW2.877e-1947.4730S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_ANATD2.877e-1947.4730S ribosomal protein S5 OS=Anaerocellum thermophi... [more]
RS5_THEPX3.758e-1946.0830S ribosomal protein S5 OS=Thermoanaerobacter sp.... [more]
RS5_THEP33.758e-1946.0830S ribosomal protein S5 OS=Thermoanaerobacter pse... [more]
RS5_SYNWW3.758e-1947.4730S ribosomal protein S5 OS=Syntrophomonas wolfei ... [more]
RS5_BACSU3.758e-1948.4830S ribosomal protein S5 OS=Bacillus subtilis GN=r... [more]
RS5_MOOTA6.409e-1950.5130S ribosomal protein S5 OS=Moorella thermoacetica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E02_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E02-J3-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674593 ID=CX674593; Name=CX674593; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTTTTTTTTTAGTACCAACTGGAAACAAATTGGATAAAACTAG
AAGACCAGCTTGAGCCACAAAATCAAGAGAGATGTCTGATGTTTGTATTT
GGGGTTGCATTACATAAACCATTTTACAGAATCTACACTACAGGGCAAAG
AACTCAAGCCACTTCTAGAGCCATCACTTCCATAATTCTTCCATTGGGAT
CCCGCGCTCACGAGAAACTTCACGCCACTGCTTCATTTTCTGCACTGCAA
CAACCGTTGCTCTAGCATTGTTGAGGGCATTGTTACTCCCAAGTTGCTTC
CCCAAAGCATTCTCAACACCTGCCATTTCAAGAACAATTCTAACAGCACC
TCCAGCAATCACTCCAGTACCAGGAGAAGCAGGTCTGAGCATCACCTTAG
CCGCCCCAAAATCACCATCAGATCTGTGTGGGAAAGTCAAGTACTTAGTC
ATAGGGACAGTAACAATATTCCTCCTAGCATCAACGGCGGATTTCTGCAC
GGCAGCAATAACTTCTTTAGCTTTGGCAACGCCAACACCAACTTGGCCTT
TCTTATCACCAACCACAACAATAGCTCTAAACTTCAACTGCTTCCCTCCT
TTGACCACCTTCGTCACTCTTCTGACTTGAACCACTCTTTCTTCAAACCC
ATCCTTCACTTTCTCCTTCTTCGTTTTCCCAAAAGCACTCGTCTTTTTCG
CCTTCGAGTCCATCACATAAACATCATTCCCCGAGACGCTGACTCCCGCG
TACGCGGGTCCGTACAATTCTTCGTAAGCAGCGGCAATTTCGTCCTCGGT
TTCCATTGGGAGCTCGTC
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