CV884252

Overview
NameCV884252
Unique NameCV884252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   52 FKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            FKRYVE+GRV LV  G+  G+L VIVD++D  RAL+D+P  +  R  + +  + LT I + +PR  +   +    +  DV NKW SS+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK  K
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.417e-20
Identity = 57/136 (41.91%), Postives = 77/136 (56.62%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 447
            MPF+R+V+ GR+A  + G   GRLV IVDV+DQNR LVD P   + R +     L LT  +I  P     + +  A  ++D+K +W+ S W  K     KR+SLNDFDRFKL  AK ++  L+      LKK   A
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKA 136          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 55/132 (41.67%), Postives = 74/132 (56.06%), Query Frame = 1
Query:   46 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 435
            MPF+R+V+ GR+A  + G   GRLV IVDV+DQNR LVD P   + R +     L LT  +I  P     + +  A   +D+K +W+ S W  K     KR+ LNDFDRFKL  AK ++  L+      LKK
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKK 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   52 FKRYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAP--DMVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKL 429
            F  +VEIGRV ++NYG+   +  VI+DVLDQNRALV  P   + R  +NFK ++LT +K++I R  +  TLI A++ AD++ K  + S  +K+  +  +++  DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 45/125 (36.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   58 RYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPD--MVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAK 426
            R VE+GRV L+  G+  G+L  IV+++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+  +++RA+L DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CV884252 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 45/125 (36.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   58 RYVEIGRVALVNYGKEYGRLVVIVDVLDQNRALVDAPD--MVRGQMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAK 426
            R VE+GRV L+  G+  G+L  IV+++DQ + L+D P   + R  +N  ++ LT +   +PR  +  T+      A V  KW +SSW +K+  +++RA+L DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
The following BLAST results are available for this feature:
BLAST of CV884252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_SCHPO4.036e-2142.3160S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14_DROME3.417e-2041.9160S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14_DROVI4.934e-1941.6760S ribosomal protein L14 OS=Drosophila virilis GN... [more]
RL14_DICDI9.305e-1840.6360S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14B_YEAST9.305e-1836.0060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST1.215e-1736.0060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884252 ID=CV884252; Name=CV884252; organism=Citrus sinensis; type=EST; length=606bp
CTTCCTCACACAGCCACACACCATCACCAACCAGAATCCCCAAAAATGCC
GTTCAAGAGGTACGTGGAGATCGGGAGGGTCGCCCTCGTCAACTACGGCA
AAGAATACGGCAGGCTCGTCGTCATCGTAGATGTCTTAGATCAGAACAGA
GCTCTAGTTGATGCCCCTGATATGGTGAGAGGCCAAATGAACTTCAAGAG
GCTTTCACTGACTGATATCAAAATTGACATTCCCCGTGTACCGAAGAAGA
AGACATTGATTGATGCTATGGAGAAGGCTGATGTTAAGAACAAGTGGGAA
AGTAGCTCTTGGGGAAGAAAGCTGATTGTTCAGAAGAAGAGAGCATCACT
TAATGACTTTGACAGGTTCAAGCTTATGTTGGCCAAGATCAAGAAGGGAG
GTTTGGTCAGGCAGGAGCTTGCTAAGCTGAAGAAGGAGAATGCAGCCTAA
TGTTATCCGATGTGTAGCTTCCAATTTTGTTGTGATGATGGCTAAATTTT
CTTCAAGAACGTTTTACATTTATTTTTGTGTCAGTTCTGAGATTAAGACC
AATTTAAGGAGATGCTTTTTATATTATGATACTGTAGTCAGTGTTACCTG
CAAAAA
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